CF836103
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836103 vs. ExPASy Swiss-Prot
Match: PAB2_SCHPO (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe GN=pab2 PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 7.861e-20 Identity = 52/82 (63.41%), Postives = 58/82 (70.73%), Query Frame = -2 Query: 594 QQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGR 836 Q HF SCG+VNRVTIL DKF G PKGFAY+EF E V NALLLN + LH R LKV+ KRTN+PGM + RGR RGR Sbjct: 72 QSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNVPGMSRGRGRGRGRGRGRGR 153
BLAST of CF836103 vs. ExPASy Swiss-Prot
Match: EPA2B_XENLA (Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis GN=epabp2-B PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.091e-16 Identity = 49/98 (50.00%), Postives = 65/98 (66.33%), Query Frame = -2 Query: 567 QQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQ-----FRGR-RPNTFGF-RGRRPFIPGVPF 836 + HF SCG++NR+TIL DKF G PKG+AY+EF E ++V A+ ++ET GR +KV KRTN+PG+ FRGR R N + RG+RP G PF Sbjct: 110 EAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTNMPGISSTDRGGFRGRPRGNRGNYQRGQRP--RGRPF 205
BLAST of CF836103 vs. ExPASy Swiss-Prot
Match: EPA2A_XENLA (Embryonic polyadenylate-binding protein 2-A OS=Xenopus laevis GN=epabp2-A PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.091e-16 Identity = 49/98 (50.00%), Postives = 65/98 (66.33%), Query Frame = -2 Query: 567 QQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQ-----FRGR-RPNTFGF-RGRRPFIPGVPF 836 + HF SCG++NR+TIL DKF G PKG+AY+EF E ++V A+ ++ET GR +KV KRTN+PG+ FRGR R N + RG+RP G PF Sbjct: 110 EAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGISSTDRGGFRGRPRGNRGNYQRGQRP--RGRPF 205
BLAST of CF836103 vs. ExPASy Swiss-Prot
Match: PABP2_DROPS (Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura pseudoobscura GN=Pabp2 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 5.830e-15 Identity = 42/83 (50.60%), Postives = 53/83 (63.86%), Query Frame = -2 Query: 591 QQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGRR 836 + HF CGT+NRVTIL +K G PKGFAY+EF + V+ AL +NET GRQ+KV +KRTN PG+ +F RG R Sbjct: 113 EAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGAR 195
BLAST of CF836103 vs. ExPASy Swiss-Prot
Match: PABP2_DROME (Polyadenylate-binding protein 2 OS=Drosophila melanogaster GN=Pabp2 PE=1 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 5.830e-15 Identity = 42/83 (50.60%), Postives = 53/83 (63.86%), Query Frame = -2 Query: 591 QQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGRR 836 + HF CGT+NRVTIL +K G PKGFAY+EF + V+ AL +NET GRQ+KV +KRTN PG+ +F RG R Sbjct: 113 EAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGAR 195
BLAST of CF836103 vs. ExPASy Swiss-Prot
Match: PABP2_DICDI (Polyadenylate-binding protein 2 OS=Dictyostelium discoideum GN=pabpn1 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 7.614e-15 Identity = 42/81 (51.85%), Postives = 56/81 (69.14%), Query Frame = -2 Query: 591 HFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGRR 830 +FQSCGTVNR+TIL+DK G PKG YVEFV +++ NA+ LN++ + RQLK++ KRTN+P + P GFRG R Sbjct: 120 YFQSCGTVNRITILSDKTTGHPKGCCYVEFVNKESIINAMALNDSFFNERQLKITPKRTNLPYYMRQGVLPPGRGGFRGGR 200
BLAST of CF836103 vs. ExPASy Swiss-Prot
Match: PABP2_MOUSE (Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3) HSP 1 Score: 80.1073 bits (196), Expect = 1.696e-14 Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = -2 Query: 594 QQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM---------KQFRGRRPNTFGFRGR 836 + HF CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+ GRQ+KV KRTN PG+ ++R R N R R Sbjct: 185 EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRSRYRARTTNYNSSRSR 275
BLAST of CF836103 vs. ExPASy Swiss-Prot
Match: PABP2_HUMAN (Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3) HSP 1 Score: 80.1073 bits (196), Expect = 1.696e-14 Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = -2 Query: 594 QQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMK---------QFRGRRPNTFGFRGR 836 + HF CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+ GRQ+KV KRTN PG+ ++R R N R R Sbjct: 189 EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSR 279
BLAST of CF836103 vs. ExPASy Swiss-Prot
Match: PABP2_BOVIN (Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3) HSP 1 Score: 80.1073 bits (196), Expect = 1.696e-14 Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = -2 Query: 594 QQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMK---------QFRGRRPNTFGFRGR 836 + HF CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+ GRQ+KV KRTN PG+ ++R R N R R Sbjct: 189 EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSR 279
BLAST of CF836103 vs. ExPASy Swiss-Prot
Match: PAB2A_XENLA (Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-A PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.696e-14 Identity = 38/66 (57.58%), Postives = 50/66 (75.76%), Query Frame = -2 Query: 642 QQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM 836 + HF CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+ GRQ+KV KRTN PG+ Sbjct: 180 EAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLFRGRQIKVVPKRTNRPGI 245 The following BLAST results are available for this feature:
BLAST of CF836103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836103 ID=CF836103; Name=CF836103; organism=Citrus sinensis; type=EST; length=837bpback to top |