CF836104

Overview
NameCF836104
Unique NameCF836104
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1153 contig Csv1_Contig1153:1..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: PAB2_SCHPO (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe GN=pab2 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.805e-31
Identity = 68/110 (61.82%), Postives = 81/110 (73.64%), Query Frame = 2 
Query:    5 ATHAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGR 331
            A   +KE +D++S+YVGNVDY+ TPEE+Q HF SCG+VNRVTIL DKF G PKGFAY+EF E   V NALLLN + LH R LKV+ KRTN+PGM + RGR       RGR
Sbjct:   44 ALRNDKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNVPGMSRGRGRGRGRGRGRGR 153
[Close]
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: EPA2B_XENLA (Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis GN=epabp2-B PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.394e-26
Identity = 63/122 (51.64%), Postives = 85/122 (69.67%), Query Frame = 2 
Query:   17 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQ-----FRGR-RPNTFGF-RGRRPFIPGVPF 358
            EK+E+D RS+YVGNVDY  T ++++ HF SCG++NR+TIL DKF G PKG+AY+EF E ++V  A+ ++ET   GR +KV  KRTN+PG+       FRGR R N   + RG+RP   G PF
Sbjct:   86 EKKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTNMPGISSTDRGGFRGRPRGNRGNYQRGQRP--RGRPF 205
[Close]
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: EPA2A_XENLA (Embryonic polyadenylate-binding protein 2-A OS=Xenopus laevis GN=epabp2-A PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.788e-26
Identity = 63/122 (51.64%), Postives = 85/122 (69.67%), Query Frame = 2 
Query:   17 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQ-----FRGR-RPNTFGF-RGRRPFIPGVPF 358
            EK+E+D RS+YVGNVDY  T ++++ HF SCG++NR+TIL DKF G PKG+AY+EF E ++V  A+ ++ET   GR +KV  KRTN+PG+       FRGR R N   + RG+RP   G PF
Sbjct:   86 EKKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGISSTDRGGFRGRPRGNRGNYQRGQRP--RGRPF 205
[Close]
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: PABP2_DROPS (Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura pseudoobscura GN=Pabp2 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.684e-25
Identity = 57/107 (53.27%), Postives = 74/107 (69.16%), Query Frame = 2 
Query:   17 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGRR 334
            EK+E+D+RS+YVGNVDY  + EE++ HF  CGT+NRVTIL +K  G PKGFAY+EF   + V+ AL +NET   GRQ+KV +KRTN PG+         +F  RG R
Sbjct:   89 EKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGAR 195
[Close]
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: PABP2_DROME (Polyadenylate-binding protein 2 OS=Drosophila melanogaster GN=Pabp2 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.684e-25
Identity = 57/107 (53.27%), Postives = 74/107 (69.16%), Query Frame = 2 
Query:   17 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGRR 334
            EK+E+D+RS+YVGNVDY  + EE++ HF  CGT+NRVTIL +K  G PKGFAY+EF   + V+ AL +NET   GRQ+KV +KRTN PG+         +F  RG R
Sbjct:   89 EKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGAR 195
[Close]
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: PABP2_MOUSE (Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 8.358e-25
Identity = 60/115 (52.17%), Postives = 76/115 (66.09%), Query Frame = 2 
Query:   17 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM---------KQFRGRRPNTFGFRGR 331
            EK E D+RSIYVGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+   GRQ+KV  KRTN PG+          ++R R  N    R R
Sbjct:  161 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRSRYRARTTNYNSSRSR 275
[Close]
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: PABP2_HUMAN (Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 8.358e-25
Identity = 60/115 (52.17%), Postives = 76/115 (66.09%), Query Frame = 2 
Query:   17 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMK---------QFRGRRPNTFGFRGR 331
            EK E D+RSIYVGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+   GRQ+KV  KRTN PG+          ++R R  N    R R
Sbjct:  165 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSR 279
[Close]
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: PABP2_BOVIN (Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 8.358e-25
Identity = 60/115 (52.17%), Postives = 76/115 (66.09%), Query Frame = 2 
Query:   17 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMK---------QFRGRRPNTFGFRGR 331
            EK E D+RSIYVGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+   GRQ+KV  KRTN PG+          ++R R  N    R R
Sbjct:  165 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSR 279
[Close]
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: PAB2A_XENLA (Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-A PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.358e-25
Identity = 55/90 (61.11%), Postives = 69/90 (76.67%), Query Frame = 2 
Query:   17 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM 283
            EK E D+RSIYVGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+   GRQ+KV  KRTN PG+
Sbjct:  156 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLFRGRQIKVVPKRTNRPGI 245
[Close]
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: PABP2_DICDI (Polyadenylate-binding protein 2 OS=Dictyostelium discoideum GN=pabpn1 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.092e-24
Identity = 56/109 (51.38%), Postives = 78/109 (71.56%), Query Frame = 2 
Query:   11 HAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGRR 334
            + ++EE+DSRS+YVGNVDY  T +++  +FQSCGTVNR+TIL+DK  G PKG  YVEFV  +++ NA+ LN++  + RQLK++ KRTN+P   +     P   GFRG R
Sbjct:   92 NTDQEEIDSRSVYVGNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGCCYVEFVNKESIINAMALNDSFFNERQLKITPKRTNLPYYMRQGVLPPGRGGFRGGR 200
The following BLAST results are available for this feature:
BLAST of CF836104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PAB2_SCHPO7.805e-3161.82Polyadenylate-binding protein 2 OS=Schizosaccharom... [more]
EPA2B_XENLA3.394e-2651.64Embryonic polyadenylate-binding protein 2-B OS=Xen... [more]
EPA2A_XENLA5.788e-2651.64Embryonic polyadenylate-binding protein 2-A OS=Xen... [more]
PABP2_DROPS1.684e-2553.27Polyadenylate-binding protein 2 OS=Drosophila pseu... [more]
PABP2_DROME1.684e-2553.27Polyadenylate-binding protein 2 OS=Drosophila mela... [more]
PABP2_MOUSE8.358e-2552.17Polyadenylate-binding protein 2 OS=Mus musculus GN... [more]
PABP2_HUMAN8.358e-2552.17Polyadenylate-binding protein 2 OS=Homo sapiens GN... [more]
PABP2_BOVIN8.358e-2552.17Polyadenylate-binding protein 2 OS=Bos taurus GN=P... [more]
PAB2A_XENLA8.358e-2561.11Polyadenylate-binding protein 2-A OS=Xenopus laevi... [more]
PABP2_DICDI1.092e-2451.38Polyadenylate-binding protein 2 OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02G19_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02G19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836104 ID=CF836104; Name=CF836104; organism=Citrus sinensis; type=EST; length=727bp
TTCTGCAACTCACGCTGAAAAGGAGGAGGTGGACTCCCGATCAATCTATG
TTGGCAATGTAGACTATGCATGCACTCCTGAGGAAGTGCAGCAGCATTTT
CAATCTTGTGGAACGGTTAACAGAGTGACGATTTTGACAGACAAGTTTGG
TCAACCAAAAGGATTTGCTTATGTTGAGTTTGTTGAAATTGATGCTGTTC
AGAATGCTCTTTTGTTAAATGAAACAGAGCTCCATGGTCGACAATTGAAG
GTCTCTGCTAAGCGAACCAACATTCCTGGTATGAAACAATTCCGAGGAAG
GCGACCCAACACGTTTGGTTTCCGAGGTCGAAGGCCATTCATTCCTGGTG
TTCCTTTTGTTCCATATGGGTATGGAAGGATTCCAAGGTTCAGACGACCC
ATGAGGTACAGGCCATACTAATGGTGGTATCTCATGTTAGTCTTGGTCCA
AATTCATTCTTAGACAGTCGTGTCATTATATCTGTAATTTGGGGAAGAAA
AAAGCATTTGTATCATCATTGGCATGTGGAAGCCAACTGGCTCCTTCCTG
GAGGGCTTTGCCTGCAGCAGTTATGGATTTTAATTTTACTTGGAAGTCCT
GCATTTGCTTGCTTTGGAAAGGGATAGAAGAAAGGCAGAAATGCAGATGT
TGTAGTAACAAAAATGTTTTTCATGTATTTGTGAACTCTTGATCTTAGAT
TGGGCATTTTAAGGTTCATACTGTTGT
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