CF836142
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS191_ARATH (40S ribosomal protein S19-1 OS=Arabidopsis thaliana GN=RPS19A PE=2 SV=1) HSP 1 Score: 254.603 bits (649), Expect = 2.903e-67 Identity = 121/141 (85.82%), Postives = 129/141 (91.49%), Query Frame = -3 Query: 164 METAKNVKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIAV 586 M T K VKDVSPH+FVKAYA+H KRSGKIELPTW DIVKTG LKELAPYDPDWYYIRAASMARK+YLRGGLGVG+FRRIYGG KRNGSRPPHF KSSG +ARHIL QL+ NI+ELD+KGGRRITSSGQRDLDQVAGRIAV Sbjct: 1 MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKGGRRITSSGQRDLDQVAGRIAV 141
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS193_ARATH (40S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1) HSP 1 Score: 252.292 bits (643), Expect = 1.441e-66 Identity = 121/140 (86.43%), Postives = 127/140 (90.71%), Query Frame = -3 Query: 167 METAKNVKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 586 M T K VKDVSPHEFVKAYAAH KRSGKIELP W DIVKTG LKELAPYDPDWYYIRAASMARK+YLRGGLGVG+FRRIYGG KRNGSRPPHF KSSG VARHIL QLQ NI++LD+KGGR+ITSSGQRDLDQVAGRIA Sbjct: 1 MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKITSSGQRDLDQVAGRIA 140
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS192_ARATH (40S ribosomal protein S19-2 OS=Arabidopsis thaliana GN=RPS19B PE=2 SV=1) HSP 1 Score: 249.21 bits (635), Expect = 1.220e-65 Identity = 119/140 (85.00%), Postives = 127/140 (90.71%), Query Frame = -3 Query: 167 METAKNVKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 586 M T K VKDVSPH+FVKAYA+H KRSGKIELP W DIVKTG LKELAPYDPDWYYIRAASMARKIYLRGGLGVG+FRRIYGG KRNGSRPPHF KSSG +ARHIL QL+ +I+ELD+KGGRRITSSGQRDLDQVAGRIA Sbjct: 1 MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRRITSSGQRDLDQVAGRIA 140
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS19_ORYSJ (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica GN=RPS19A PE=3 SV=1) HSP 1 Score: 214.927 bits (546), Expect = 2.549e-55 Identity = 101/139 (72.66%), Postives = 118/139 (84.89%), Query Frame = -3 Query: 164 TAKNVKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIAV 580 TA+ VKDV+PHEFVKAY+AH KRSGK+ELP W DIVKT KEL PYDPDWYY RAAS+ARKIYLR G+GVG F++IYGG +RNGSRPPHF KSSG+++R+IL QLQ II++D KGGR ITS G+RDLDQVAGR+ V Sbjct: 5 TARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQVAGRVDV 143
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS19_MYAAR (40S ribosomal protein S19 OS=Mya arenaria GN=RPS19 PE=2 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 8.506e-43 Identity = 75/135 (55.56%), Postives = 104/135 (77.04%), Query Frame = -3 Query: 167 NVKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 571 +VKDVS HEF +A+AA K+SGK+++P W D VKTG KEL+PY+PDWY+IRAAS+ R +Y+R G+GSF +IYGG +R G+ P HF K++GS++R +L L+ I+E D GGRR+TS G+RDLD++A +IA Sbjct: 4 SVKDVSSHEFTRAFAAFLKKSGKMKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICRHLYIRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKDPNGGRRLTSQGRRDLDRIAAQIA 138
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS19_MYXGL (40S ribosomal protein S19 OS=Myxine glutinosa GN=rps19 PE=2 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 5.513e-42 Identity = 78/137 (56.93%), Postives = 106/137 (77.37%), Query Frame = -3 Query: 158 VKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIAVVA 568 VKDV+ EFVKA AA FK+SGK++ P W D VK G KELAP+D DWYYIR AS+AR +Y+RGG+GVG+ +IYGG +RNG+RP H+S+ S +VAR +L L+ ++E D GGRR+TS GQRD+D++AG++ V++ Sbjct: 6 VKDVNQQEFVKALAAFFKKSGKLKKPDWVDTVKLGKHKELAPFDIDWYYIRTASVARHLYMRGGVGVGAMTKIYGGRQRNGTRPSHYSRGSRNVARKVLQSLEMLKMVEKDPNGGRRLTSIGQRDMDRIAGQVVVLS 142
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS19_BRABE (40S ribosomal protein S19 OS=Branchiostoma belcheri GN=RPS19 PE=2 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 2.736e-41 Identity = 77/134 (57.46%), Postives = 103/134 (76.87%), Query Frame = -3 Query: 167 VKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 568 VKDV+ EFVKA+AA K+SGK++LP W D+VKT KELAPYDPDW+Y+RAAS AR +Y+RGG+GVG+ +IYGG KR G++P F S V+R +L L+ ++E D+ GGRR+TS GQRDLD++AG++A Sbjct: 7 VKDVNQQEFVKAFAAFLKKSGKLKLPEWVDLVKTAPHKELAPYDPDWFYLRAASTARHLYMRGGVGVGAMCKIYGGRKRRGTKPAKFRVCSRGVSRTVLQSLEGIKMVEKDAAGGRRLTSQGQRDLDRIAGQVA 140
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS19_RAT (40S ribosomal protein S19 OS=Rattus norvegicus GN=Rps19 PE=2 SV=3) HSP 1 Score: 164.466 bits (415), Expect = 3.951e-40 Identity = 77/134 (57.46%), Postives = 99/134 (73.88%), Query Frame = -3 Query: 167 VKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 568 VKDV+ EFV+A AA K+SGK+++P W D VK KELAPYD +W+Y RAAS AR +YLRGG GVGS +IYGG +RNG RP HFS+ S SVAR +L L+ ++E D GGR++T GQRDLD++AG++A Sbjct: 6 VKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVRPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVA 139
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS19_MOUSE (40S ribosomal protein S19 OS=Mus musculus GN=Rps19 PE=1 SV=3) HSP 1 Score: 164.466 bits (415), Expect = 3.951e-40 Identity = 77/134 (57.46%), Postives = 99/134 (73.88%), Query Frame = -3 Query: 167 VKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 568 VKDV+ EFV+A AA K+SGK+++P W D VK KELAPYD +W+Y RAAS AR +YLRGG GVGS +IYGG +RNG RP HFS+ S SVAR +L L+ ++E D GGR++T GQRDLD++AG++A Sbjct: 6 VKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVRPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVA 139
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS19_PONAB (40S ribosomal protein S19 OS=Pongo abelii GN=RPS19 PE=2 SV=3) HSP 1 Score: 162.155 bits (409), Expect = 1.961e-39 Identity = 76/134 (56.72%), Postives = 98/134 (73.13%), Query Frame = -3 Query: 167 VKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 568 VKDV+ EFV+A AA K+SGK+++P W D VK KELAPYD +W+Y RAAS AR +YLRGG GVGS +IYGG +RNG P HFS+ S SVAR +L L+ ++E D GGR++T GQRDLD++AG++A Sbjct: 6 VKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVA 139 The following BLAST results are available for this feature:
BLAST of CF836142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 37
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF836142 ID=CF836142; Name=CF836142; organism=Citrus sinensis; type=EST; length=618bpback to top |