CF836273

Overview
NameCF836273
Unique NameCF836273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB1_ARATH (Tryptophan synthase beta chain 1, chloroplastic OS=Arabidopsis thaliana GN=TSB1 PE=2 SV=1)

HSP 1 Score: 362.844 bits (930), Expect = 1.122e-99
Identity = 173/195 (88.72%), Postives = 188/195 (96.41%), Query Frame = -2
Query:  176 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 760
            PMMVRDFHAVIGKETR+QALEKWGGKPDVL+ACVGGGSNAMGLFHEFVND +VR+IGVEAAGFGLDSGKHAATL+KG+VGVLHGA+SYLLQD+DGQIIEPHSISAGLDYPGVGPEHSF KD GRAEYY++TD+EALEAFKR SRLEGIIPALET+HALAYLEKLCPTL+DGT+VV+NFSGRGDKDVQT  KYL V
Sbjct:  276 PMMVRDFHAVIGKETRKQALEKWGGKPDVLVACVGGGSNAMGLFHEFVNDTEVRMIGVEAAGFGLDSGKHAATLTKGDVGVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSFFKDMGRAEYYSITDEEALEAFKRVSRLEGIIPALETSHALAYLEKLCPTLSDGTRVVLNFSGRGDKDVQTVAKYLDV 470          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRBP2_ARATH (Tryptophan synthase beta chain 2, chloroplastic OS=Arabidopsis thaliana GN=TSB2 PE=2 SV=2)

HSP 1 Score: 360.147 bits (923), Expect = 7.272e-99
Identity = 172/195 (88.21%), Postives = 190/195 (97.44%), Query Frame = -2
Query:  176 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 760
            PMMVRDFHAVIGKETR+QA+EKWGGKPDVL+ACVGGGSNAMGLFHEFV+D +VR+IGVEAAGFGLDSGKHAATL+KG+VGVLHGA+SYLLQD+DGQIIEPHSISAGLDYPGVGPEHSFLKD GRAEY++VTD+EALEAFKR SRLEGIIPALET+HALA+LEKLCPTL DG +VV+NFSGRGDKDVQTAIKYL+V
Sbjct:  281 PMMVRDFHAVIGKETRKQAMEKWGGKPDVLVACVGGGSNAMGLFHEFVDDTEVRMIGVEAAGFGLDSGKHAATLTKGDVGVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSFLKDVGRAEYFSVTDEEALEAFKRVSRLEGIIPALETSHALAHLEKLCPTLPDGARVVLNFSGRGDKDVQTAIKYLEV 475          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_CAMAC (Tryptophan synthase beta chain 2, chloroplastic OS=Camptotheca acuminata GN=TSB PE=2 SV=1)

HSP 1 Score: 357.836 bits (917), Expect = 3.609e-98
Identity = 174/195 (89.23%), Postives = 188/195 (96.41%), Query Frame = -2
Query:  176 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 760
            PMMVR+FHAVIGKETR+QALEKWGGKPDVL+ACVGGGSNAMGLFHEFV+DKDVR+IGVEAAGFGLDSGKHAATL+KGEVGVLHGA+SYLLQD+DGQIIEPHSISAGLDYPGVGPEHSFLKD GRAEYY  TD+EALEAFKR SRLEGIIPALET+HALA+LEKLCPTL +GTKVV+N SGRGDKDV TAIK+LQV
Sbjct:  272 PMMVREFHAVIGKETRKQALEKWGGKPDVLVACVGGGSNAMGLFHEFVDDKDVRMIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSFLKDIGRAEYYCCTDEEALEAFKRLSRLEGIIPALETSHALAFLEKLCPTLPNGTKVVLNCSGRGDKDVHTAIKHLQV 466          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB2_MAIZE (Tryptophan synthase beta chain 2, chloroplastic (Fragment) OS=Zea mays GN=TSB2 PE=2 SV=1)

HSP 1 Score: 340.887 bits (873), Expect = 4.565e-93
Identity = 163/195 (83.59%), Postives = 182/195 (93.33%), Query Frame = -2
Query:  176 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 760
            PMMVR+FH VIGKETRRQA++KWGGKPDVL+ACVGGGSNAMGLFHEFV D+DVRL+G+EAAG G+D+ KHAATL+KG+VGVLHG++SYLLQD+DGQ+IEPHSISAGLDYPGVGPEHSFLKD GRAEY +VTD EAL+AFKR SRLEGIIPALET+HALAYLEKLCPTLADG +VVVN SGRGDKDV TA KYL V
Sbjct:  249 PMMVREFHKVIGKETRRQAMDKWGGKPDVLVACVGGGSNAMGLFHEFVEDQDVRLVGLEAAGHGVDTDKHAATLTKGQVGVLHGSMSYLLQDDDGQVIEPHSISAGLDYPGVGPEHSFLKDIGRAEYDSVTDQEALDAFKRVSRLEGIIPALETSHALAYLEKLCPTLADGVRVVVNCSGRGDKDVHTASKYLDV 443          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB1_MAIZE (Tryptophan synthase beta chain 1 (Fragment) OS=Zea mays GN=TSB1 PE=2 SV=1)

HSP 1 Score: 338.576 bits (867), Expect = 2.266e-92
Identity = 163/195 (83.59%), Postives = 180/195 (92.31%), Query Frame = -2
Query:  176 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 760
            PMMVR+FH VIGKETRRQA+ KWGGKPDVL+ACVGGGSNAMGLFHEFV D+DVRLIGVEAAG G+D+ KHAATL+KG+VGVLHG++SYLLQD+DGQ+IEPHSISAGLDYPGVGPEHSFLKD GRAEY +VTD EAL+AFKR SRLEGIIPALET+HALAYLEKLCPTL DG +VV+N SGRGDKDV TA KYL V
Sbjct:  195 PMMVREFHKVIGKETRRQAMHKWGGKPDVLVACVGGGSNAMGLFHEFVEDQDVRLIGVEAAGHGVDTDKHAATLTKGQVGVLHGSMSYLLQDDDGQVIEPHSISAGLDYPGVGPEHSFLKDIGRAEYDSVTDQEALDAFKRVSRLEGIIPALETSHALAYLEKLCPTLPDGVRVVLNCSGRGDKDVHTASKYLDV 389          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB2_ANASP (Tryptophan synthase beta chain 2 OS=Anabaena sp. (strain PCC 7120) GN=trpB2 PE=3 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.204e-85
Identity = 151/193 (78.24%), Postives = 173/193 (89.64%), Query Frame = -2
Query:  182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760
            PMMVRDFHAVIG+ETR QALEKWGG PD+L+ACVGGGSNAMGLF+EFVN+  ++LIGVEAAG G+++ KHAATL+KG VGVLHGA+SYLLQDEDGQ+IE HSISAGLDYPGVGPEHS+LKD GRAEYY+VTD+EAL AF+R SRLEGIIPALETAHA+AYLE LCP L    ++V+N SGRGDKDVQT  K+L
Sbjct:  218 PMMVRDFHAVIGQETRAQALEKWGGLPDILLACVGGGSNAMGLFYEFVNESSIKLIGVEAAGEGVNTEKHAATLTKGRVGVLHGAMSYLLQDEDGQVIEAHSISAGLDYPGVGPEHSYLKDVGRAEYYSVTDEEALAAFQRLSRLEGIIPALETAHAIAYLETLCPQLDGSPRIVINCSGRGDKDVQTVAKFL 410          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_ANAVT (Tryptophan synthase beta chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=trpB PE=3 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.573e-85
Identity = 150/193 (77.72%), Postives = 173/193 (89.64%), Query Frame = -2
Query:  182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760
            PMMVRDFHAVIG+ETR QALEKWGG PD+L+ACVGGGSNAMGLF+EFVN+  +RLIGVEAAG G+++ KHAATL+KG VGVLHGA+SYLLQDEDGQ+IE HSISAGLDYPGVGPEHS+LKD GRAEYY+VTD++AL AF+R SRLEGIIPALETAHA+AYLE LCP L    ++++N SGRGDKDVQT  K+L
Sbjct:  218 PMMVRDFHAVIGQETRAQALEKWGGLPDILLACVGGGSNAMGLFYEFVNESSIRLIGVEAAGEGVNTEKHAATLTKGRVGVLHGAMSYLLQDEDGQVIEAHSISAGLDYPGVGPEHSYLKDVGRAEYYSVTDEQALAAFQRLSRLEGIIPALETAHAIAYLETLCPQLDGSPRIIINCSGRGDKDVQTVAKFL 410          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_TRIEI (Tryptophan synthase beta chain OS=Trichodesmium erythraeum (strain IMS101) GN=trpB PE=3 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 1.019e-84
Identity = 150/194 (77.32%), Postives = 170/194 (87.63%), Query Frame = -2
Query:  179 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 760
            PMMVRDFHAVIG ETR Q LEKW G PD+L+ACVGGGSNAMGLFHEF+ND  VR+IGVEAAG G+D+ KHAATL+ G VGVLHGA+SYLLQDE+GQIIEPHSISAGLDYPGVGPEHSFLKD GR EYY+VTD+EA+ AF+R S+LEGIIPALETAHA+AYLE LCP L+   ++V N SGRGDKDVQT  K+L+
Sbjct:  215 PMMVRDFHAVIGVETRAQCLEKWNGLPDILMACVGGGSNAMGLFHEFINDPSVRMIGVEAAGKGVDTNKHAATLTLGRVGVLHGAMSYLLQDEEGQIIEPHSISAGLDYPGVGPEHSFLKDSGRVEYYSVTDNEAVAAFQRLSQLEGIIPALETAHAIAYLETLCPQLSGSPRIVFNCSGRGDKDVQTVGKFLE 408          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_THEEB (Tryptophan synthase beta chain OS=Thermosynechococcus elongatus (strain BP-1) GN=trpB PE=3 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 8.077e-82
Identity = 145/194 (74.74%), Postives = 168/194 (86.60%), Query Frame = -2
Query:  179 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 760
            PM+VR+FHAVIG ETR+Q LEKWGG PD+L+ACVGGGSNAMGLFHEFV +  VRLIGVEAAG GLD+G HAATL+KGEVGVLHGA+SYLLQD DGQ++E HSISAGLDYPGVGPEHS+LKD GRAEYY+VTD EA+ A  R ++LEGI+PALETAHALAYLE LCP L    ++V+N SGRGDKDV+T  +Y +
Sbjct:  215 PMLVREFHAVIGAETRQQCLEKWGGLPDILLACVGGGSNAMGLFHEFVEEPQVRLIGVEAAGQGLDTGHHAATLTKGEVGVLHGAMSYLLQDADGQVVEAHSISAGLDYPGVGPEHSYLKDIGRAEYYSVTDTEAVAACVRLAQLEGILPALETAHALAYLETLCPQLTGQPRIVINCSGRGDKDVETIGRYFE 408          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_SYNY3 (Tryptophan synthase beta chain OS=Synechocystis sp. (strain PCC 6803) GN=trpB PE=3 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 1.055e-81
Identity = 143/195 (73.33%), Postives = 171/195 (87.69%), Query Frame = -2
Query:  176 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 760
            PMMVRDFH VIG+ETR+QAL+KWGG PD+L+ACVGGGSNAMGLF++F+++  VRLIG+EAAG  + SGKHAATL+ G+ GVLHGA+SYLLQD++GQ+ E HSISAGLDYPGVGPEHS+LKD GRAEYY+VTD EA+ A +R S+LEGIIPALETAHA AYLE LCP L +G ++V+N SGRGDKDVQT  KYLQ+
Sbjct:  216 PMMVRDFHRVIGQETRQQALKKWGGLPDILLACVGGGSNAMGLFYDFIDEPAVRLIGIEAAGESIVSGKHAATLTMGKPGVLHGAMSYLLQDKEGQVTEAHSISAGLDYPGVGPEHSYLKDAGRAEYYSVTDQEAITALQRLSQLEGIIPALETAHAFAYLETLCPQLKNGERIVINCSGRGDKDVQTVAKYLQM 410          
The following BLAST results are available for this feature:
BLAST of CF836273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 449
Match NameE-valueIdentityDescription
TRPB1_ARATH1.122e-9988.72Tryptophan synthase beta chain 1, chloroplastic OS... [more]
TRBP2_ARATH7.272e-9988.21Tryptophan synthase beta chain 2, chloroplastic OS... [more]
TRPB_CAMAC3.609e-9889.23Tryptophan synthase beta chain 2, chloroplastic OS... [more]
TRPB2_MAIZE4.565e-9383.59Tryptophan synthase beta chain 2, chloroplastic (F... [more]
TRPB1_MAIZE2.266e-9283.59Tryptophan synthase beta chain 1 (Fragment) OS=Zea... [more]
TRPB2_ANASP1.204e-8578.24Tryptophan synthase beta chain 2 OS=Anabaena sp. (... [more]
TRPB_ANAVT1.573e-8577.72Tryptophan synthase beta chain OS=Anabaena variabi... [more]
TRPB_TRIEI1.019e-8477.32Tryptophan synthase beta chain OS=Trichodesmium er... [more]
TRPB_THEEB8.077e-8274.74Tryptophan synthase beta chain OS=Thermosynechococ... [more]
TRPB_SYNY31.055e-8173.33Tryptophan synthase beta chain OS=Synechocystis sp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L07_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836273 ID=CF836273; Name=CF836273; organism=Citrus sinensis; type=EST; length=761bp
TTTTTTTTTAGAGCAATAGATGTAATATATAAAGTTTTACCTTTAAAAAC
ATAAGATGGTTCTCACATCTCTGAAATAACCCTTGATACAAAATTCAAAA
ACAGAAGCTCAAGCAACCCATTTATTTGTTTTCAGTAAATGAATCATATA
TTGCCGGTAACAAGCATTACCATCAAACTTGCAAATATTTGATCGCTGTC
TGGACATCCTTGTCACCTCTGCCACTGAAGTTAACCACAACCTTAGTACC
ATCAGCAAGAGTTGGGCATAGCTTCTCCAAATAAGCCAATGCATGAGCAG
TCTCCAAAGCTGGGATTATACCCTCTAGCCGTGATGACCTCTTGAAAGCT
TCCAATGCTTCATCATCTGTGACATTATAGTACTCAGCACGCCCTTCATC
TTTCAGAAAACTATGCTCAGGTCCAACTCCAGGGTAATCTAAGCCTGCAC
TAATGGAGTGTGGCTCAATTATTTGCCCATCTTCATCCTGCAGCAAATAG
CTCAAAGCACCATGCAACACCCCAACTTCTCCTTTGGACAAGGTAGCAGC
GTGTTTGCCACTGTCTAGACCAAAACCTGCTGCCTCCACACCAATCAACC
TAACATCCTTGTCATTAACAAATTCGTGGAAGAGACCCATGGCATTTGAA
CCACCACCAACGCATGCAATCAGCACATCTGGTTTCCCACCCCATTTCTC
CAATGCTTGTCTTCTTGTTTCTTTTCCAATCACAGCATGGAAATCTCTGA
CCATCATGGGG
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