CF836273
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB1_ARATH (Tryptophan synthase beta chain 1, chloroplastic OS=Arabidopsis thaliana GN=TSB1 PE=2 SV=1) HSP 1 Score: 362.844 bits (930), Expect = 1.122e-99 Identity = 173/195 (88.72%), Postives = 188/195 (96.41%), Query Frame = -2 Query: 176 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 760 PMMVRDFHAVIGKETR+QALEKWGGKPDVL+ACVGGGSNAMGLFHEFVND +VR+IGVEAAGFGLDSGKHAATL+KG+VGVLHGA+SYLLQD+DGQIIEPHSISAGLDYPGVGPEHSF KD GRAEYY++TD+EALEAFKR SRLEGIIPALET+HALAYLEKLCPTL+DGT+VV+NFSGRGDKDVQT KYL V Sbjct: 276 PMMVRDFHAVIGKETRKQALEKWGGKPDVLVACVGGGSNAMGLFHEFVNDTEVRMIGVEAAGFGLDSGKHAATLTKGDVGVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSFFKDMGRAEYYSITDEEALEAFKRVSRLEGIIPALETSHALAYLEKLCPTLSDGTRVVLNFSGRGDKDVQTVAKYLDV 470
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRBP2_ARATH (Tryptophan synthase beta chain 2, chloroplastic OS=Arabidopsis thaliana GN=TSB2 PE=2 SV=2) HSP 1 Score: 360.147 bits (923), Expect = 7.272e-99 Identity = 172/195 (88.21%), Postives = 190/195 (97.44%), Query Frame = -2 Query: 176 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 760 PMMVRDFHAVIGKETR+QA+EKWGGKPDVL+ACVGGGSNAMGLFHEFV+D +VR+IGVEAAGFGLDSGKHAATL+KG+VGVLHGA+SYLLQD+DGQIIEPHSISAGLDYPGVGPEHSFLKD GRAEY++VTD+EALEAFKR SRLEGIIPALET+HALA+LEKLCPTL DG +VV+NFSGRGDKDVQTAIKYL+V Sbjct: 281 PMMVRDFHAVIGKETRKQAMEKWGGKPDVLVACVGGGSNAMGLFHEFVDDTEVRMIGVEAAGFGLDSGKHAATLTKGDVGVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSFLKDVGRAEYFSVTDEEALEAFKRVSRLEGIIPALETSHALAHLEKLCPTLPDGARVVLNFSGRGDKDVQTAIKYLEV 475
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_CAMAC (Tryptophan synthase beta chain 2, chloroplastic OS=Camptotheca acuminata GN=TSB PE=2 SV=1) HSP 1 Score: 357.836 bits (917), Expect = 3.609e-98 Identity = 174/195 (89.23%), Postives = 188/195 (96.41%), Query Frame = -2 Query: 176 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 760 PMMVR+FHAVIGKETR+QALEKWGGKPDVL+ACVGGGSNAMGLFHEFV+DKDVR+IGVEAAGFGLDSGKHAATL+KGEVGVLHGA+SYLLQD+DGQIIEPHSISAGLDYPGVGPEHSFLKD GRAEYY TD+EALEAFKR SRLEGIIPALET+HALA+LEKLCPTL +GTKVV+N SGRGDKDV TAIK+LQV Sbjct: 272 PMMVREFHAVIGKETRKQALEKWGGKPDVLVACVGGGSNAMGLFHEFVDDKDVRMIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSFLKDIGRAEYYCCTDEEALEAFKRLSRLEGIIPALETSHALAFLEKLCPTLPNGTKVVLNCSGRGDKDVHTAIKHLQV 466
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB2_MAIZE (Tryptophan synthase beta chain 2, chloroplastic (Fragment) OS=Zea mays GN=TSB2 PE=2 SV=1) HSP 1 Score: 340.887 bits (873), Expect = 4.565e-93 Identity = 163/195 (83.59%), Postives = 182/195 (93.33%), Query Frame = -2 Query: 176 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 760 PMMVR+FH VIGKETRRQA++KWGGKPDVL+ACVGGGSNAMGLFHEFV D+DVRL+G+EAAG G+D+ KHAATL+KG+VGVLHG++SYLLQD+DGQ+IEPHSISAGLDYPGVGPEHSFLKD GRAEY +VTD EAL+AFKR SRLEGIIPALET+HALAYLEKLCPTLADG +VVVN SGRGDKDV TA KYL V Sbjct: 249 PMMVREFHKVIGKETRRQAMDKWGGKPDVLVACVGGGSNAMGLFHEFVEDQDVRLVGLEAAGHGVDTDKHAATLTKGQVGVLHGSMSYLLQDDDGQVIEPHSISAGLDYPGVGPEHSFLKDIGRAEYDSVTDQEALDAFKRVSRLEGIIPALETSHALAYLEKLCPTLADGVRVVVNCSGRGDKDVHTASKYLDV 443
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB1_MAIZE (Tryptophan synthase beta chain 1 (Fragment) OS=Zea mays GN=TSB1 PE=2 SV=1) HSP 1 Score: 338.576 bits (867), Expect = 2.266e-92 Identity = 163/195 (83.59%), Postives = 180/195 (92.31%), Query Frame = -2 Query: 176 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 760 PMMVR+FH VIGKETRRQA+ KWGGKPDVL+ACVGGGSNAMGLFHEFV D+DVRLIGVEAAG G+D+ KHAATL+KG+VGVLHG++SYLLQD+DGQ+IEPHSISAGLDYPGVGPEHSFLKD GRAEY +VTD EAL+AFKR SRLEGIIPALET+HALAYLEKLCPTL DG +VV+N SGRGDKDV TA KYL V Sbjct: 195 PMMVREFHKVIGKETRRQAMHKWGGKPDVLVACVGGGSNAMGLFHEFVEDQDVRLIGVEAAGHGVDTDKHAATLTKGQVGVLHGSMSYLLQDDDGQVIEPHSISAGLDYPGVGPEHSFLKDIGRAEYDSVTDQEALDAFKRVSRLEGIIPALETSHALAYLEKLCPTLPDGVRVVLNCSGRGDKDVHTASKYLDV 389
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB2_ANASP (Tryptophan synthase beta chain 2 OS=Anabaena sp. (strain PCC 7120) GN=trpB2 PE=3 SV=1) HSP 1 Score: 316.235 bits (809), Expect = 1.204e-85 Identity = 151/193 (78.24%), Postives = 173/193 (89.64%), Query Frame = -2 Query: 182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760 PMMVRDFHAVIG+ETR QALEKWGG PD+L+ACVGGGSNAMGLF+EFVN+ ++LIGVEAAG G+++ KHAATL+KG VGVLHGA+SYLLQDEDGQ+IE HSISAGLDYPGVGPEHS+LKD GRAEYY+VTD+EAL AF+R SRLEGIIPALETAHA+AYLE LCP L ++V+N SGRGDKDVQT K+L Sbjct: 218 PMMVRDFHAVIGQETRAQALEKWGGLPDILLACVGGGSNAMGLFYEFVNESSIKLIGVEAAGEGVNTEKHAATLTKGRVGVLHGAMSYLLQDEDGQVIEAHSISAGLDYPGVGPEHSYLKDVGRAEYYSVTDEEALAAFQRLSRLEGIIPALETAHAIAYLETLCPQLDGSPRIVINCSGRGDKDVQTVAKFL 410
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_ANAVT (Tryptophan synthase beta chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=trpB PE=3 SV=1) HSP 1 Score: 315.849 bits (808), Expect = 1.573e-85 Identity = 150/193 (77.72%), Postives = 173/193 (89.64%), Query Frame = -2 Query: 182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760 PMMVRDFHAVIG+ETR QALEKWGG PD+L+ACVGGGSNAMGLF+EFVN+ +RLIGVEAAG G+++ KHAATL+KG VGVLHGA+SYLLQDEDGQ+IE HSISAGLDYPGVGPEHS+LKD GRAEYY+VTD++AL AF+R SRLEGIIPALETAHA+AYLE LCP L ++++N SGRGDKDVQT K+L Sbjct: 218 PMMVRDFHAVIGQETRAQALEKWGGLPDILLACVGGGSNAMGLFYEFVNESSIRLIGVEAAGEGVNTEKHAATLTKGRVGVLHGAMSYLLQDEDGQVIEAHSISAGLDYPGVGPEHSYLKDVGRAEYYSVTDEQALAAFQRLSRLEGIIPALETAHAIAYLETLCPQLDGSPRIIINCSGRGDKDVQTVAKFL 410
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_TRIEI (Tryptophan synthase beta chain OS=Trichodesmium erythraeum (strain IMS101) GN=trpB PE=3 SV=1) HSP 1 Score: 313.153 bits (801), Expect = 1.019e-84 Identity = 150/194 (77.32%), Postives = 170/194 (87.63%), Query Frame = -2 Query: 179 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 760 PMMVRDFHAVIG ETR Q LEKW G PD+L+ACVGGGSNAMGLFHEF+ND VR+IGVEAAG G+D+ KHAATL+ G VGVLHGA+SYLLQDE+GQIIEPHSISAGLDYPGVGPEHSFLKD GR EYY+VTD+EA+ AF+R S+LEGIIPALETAHA+AYLE LCP L+ ++V N SGRGDKDVQT K+L+ Sbjct: 215 PMMVRDFHAVIGVETRAQCLEKWNGLPDILMACVGGGSNAMGLFHEFINDPSVRMIGVEAAGKGVDTNKHAATLTLGRVGVLHGAMSYLLQDEEGQIIEPHSISAGLDYPGVGPEHSFLKDSGRVEYYSVTDNEAVAAFQRLSQLEGIIPALETAHAIAYLETLCPQLSGSPRIVFNCSGRGDKDVQTVGKFLE 408
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_THEEB (Tryptophan synthase beta chain OS=Thermosynechococcus elongatus (strain BP-1) GN=trpB PE=3 SV=1) HSP 1 Score: 303.523 bits (776), Expect = 8.077e-82 Identity = 145/194 (74.74%), Postives = 168/194 (86.60%), Query Frame = -2 Query: 179 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 760 PM+VR+FHAVIG ETR+Q LEKWGG PD+L+ACVGGGSNAMGLFHEFV + VRLIGVEAAG GLD+G HAATL+KGEVGVLHGA+SYLLQD DGQ++E HSISAGLDYPGVGPEHS+LKD GRAEYY+VTD EA+ A R ++LEGI+PALETAHALAYLE LCP L ++V+N SGRGDKDV+T +Y + Sbjct: 215 PMLVREFHAVIGAETRQQCLEKWGGLPDILLACVGGGSNAMGLFHEFVEEPQVRLIGVEAAGQGLDTGHHAATLTKGEVGVLHGAMSYLLQDADGQVVEAHSISAGLDYPGVGPEHSYLKDIGRAEYYSVTDTEAVAACVRLAQLEGILPALETAHALAYLETLCPQLTGQPRIVINCSGRGDKDVETIGRYFE 408
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_SYNY3 (Tryptophan synthase beta chain OS=Synechocystis sp. (strain PCC 6803) GN=trpB PE=3 SV=1) HSP 1 Score: 303.138 bits (775), Expect = 1.055e-81 Identity = 143/195 (73.33%), Postives = 171/195 (87.69%), Query Frame = -2 Query: 176 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 760 PMMVRDFH VIG+ETR+QAL+KWGG PD+L+ACVGGGSNAMGLF++F+++ VRLIG+EAAG + SGKHAATL+ G+ GVLHGA+SYLLQD++GQ+ E HSISAGLDYPGVGPEHS+LKD GRAEYY+VTD EA+ A +R S+LEGIIPALETAHA AYLE LCP L +G ++V+N SGRGDKDVQT KYLQ+ Sbjct: 216 PMMVRDFHRVIGQETRQQALKKWGGLPDILLACVGGGSNAMGLFYDFIDEPAVRLIGIEAAGESIVSGKHAATLTMGKPGVLHGAMSYLLQDKEGQVTEAHSISAGLDYPGVGPEHSYLKDAGRAEYYSVTDQEAITALQRLSQLEGIIPALETAHAFAYLETLCPQLKNGERIVINCSGRGDKDVQTVAKYLQM 410 The following BLAST results are available for this feature:
BLAST of CF836273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 449
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836273 ID=CF836273; Name=CF836273; organism=Citrus sinensis; type=EST; length=761bpback to top |