CF836417

Overview
NameCF836417
Unique NameCF836417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836417 vs. ExPASy Swiss-Prot
Match: ST7R_ARATH (7-dehydrocholesterol reductase OS=Arabidopsis thaliana GN=DWF5 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 9.423e-52
Identity = 92/103 (89.32%), Postives = 100/103 (97.09%), Query Frame = -3
Query:  492 KAPSKIVASYTTSSGETKQSLLLTSGWWGLARHFHYVPEILAAFFWTVPALFNHFLPYFYVIFLTILLFDRAKRDDDRCRSKYGKYWKIYCQKVPYRIIPGIY 800
            +APSKIVASYTT+SGETK SLLLTSGWWGLARHFHYVPEIL+AFFWTVPALF++FL YFYVIFLT+LLFDRAKRDDDRCRSKYGKYWK+YC+KV YRIIPGIY
Sbjct:  330 RAPSKIVASYTTTSGETKTSLLLTSGWWGLARHFHYVPEILSAFFWTVPALFDNFLAYFYVIFLTLLLFDRAKRDDDRCRSKYGKYWKLYCEKVKYRIIPGIY 432          
BLAST of CF836417 vs. ExPASy Swiss-Prot
Match: DHCR7_XENTR (7-dehydrocholesterol reductase OS=Xenopus tropicalis GN=dhcr7 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.731e-24
Identity = 47/103 (45.63%), Postives = 69/103 (66.99%), Query Frame = -3
Query:  492 KAPSKIVASYTTSSGETKQSLLLTSGWWGLARHFHYVPEILAAFFWTVPALFNHFLPYFYVIFLTILLFDRAKRDDDRCRSKYGKYWKIYCQKVPYRIIPGIY 800
            K P  I  SYT++ G+   S L+ SG+WG+ARH +Y  +++ +  + +   F+H LPYFY  ++TILL  R  RD+ RC SKYGK WK+Y   VPYR++PG++
Sbjct:  371 KKPKSIECSYTSADGKRHYSKLMISGFWGVARHLNYTGDLMGSLAYCLACGFDHLLPYFYFTYMTILLVHRCIRDEHRCSSKYGKDWKLYTDAVPYRLLPGLF 473          
BLAST of CF836417 vs. ExPASy Swiss-Prot
Match: DHCR7_MIMIV (Probable 7-dehydrocholesterol reductase OS=Acanthamoeba polyphaga mimivirus GN=DHCR7 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.731e-24
Identity = 47/98 (47.96%), Postives = 68/98 (69.39%), Query Frame = -3
Query:  492 IVASYTTSSGETKQSLLLTSGWWGLARHFHYVPEILAAFFWTVPALFNHFLPYFYVIFLTILLFDRAKRDDDRCRSKYGKYWKIYCQKVPYRIIPGIY 785
            I  +Y T+ G  + S L+ SG WG++RH +Y  +I+ +  + +   F+HF+PYFY +++TILL  R  RD+ RC  KYGKYWK+Y ++VPYR IPGIY
Sbjct:  350 IPCTYQTADGLNRASKLIYSGLWGVSRHMNYTGDIILSTAYCLACGFSHFIPYFYCVYMTILLVTRCLRDEQRCSRKYGKYWKMYTKRVPYRFIPGIY 447          
BLAST of CF836417 vs. ExPASy Swiss-Prot
Match: LBR_MOUSE (Lamin-B receptor OS=Mus musculus GN=Lbr PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 6.364e-24
Identity = 48/92 (52.17%), Postives = 64/92 (69.57%), Query Frame = -3
Query:  492 TSSGETKQSLLLTSGWWGLARHFHYVPEILAAFFWTVPALFNHFLPYFYVIFLTILLFDRAKRDDDRCRSKYGKYWKIYCQKVPYRIIPGIY 767
            TS+G++    LL SGWWG  RH +Y+ +++ A  W++P  FNH LPYFY+I+ T LL  R  RD+ +CR KYG  W+ YCQ+VPYRI P IY
Sbjct:  539 TSTGKS----LLVSGWWGFVRHPNYLGDLIMALAWSLPCGFNHLLPYFYIIYFTALLIHREARDEHQCRRKYGLAWEKYCQRVPYRIFPYIY 626          
BLAST of CF836417 vs. ExPASy Swiss-Prot
Match: LBR_RAT (Lamin-B receptor OS=Rattus norvegicus GN=Lbr PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.086e-23
Identity = 46/82 (56.10%), Postives = 58/82 (70.73%), Query Frame = -3
Query:  492 LLTSGWWGLARHFHYVPEILAAFFWTVPALFNHFLPYFYVIFLTILLFDRAKRDDDRCRSKYGKYWKIYCQKVPYRIIPGIY 737
            LL SGWWG  RH +Y+ +++ A  W++P  FNH LPYFYVI+ T LL  R  RD+ +CR KYG  W+ YCQ+VPYRI P IY
Sbjct:  539 LLVSGWWGFVRHPNYLGDLIMALAWSLPCGFNHILPYFYVIYFTALLIHREARDEHQCRRKYGLAWEKYCQRVPYRIFPYIY 620          
BLAST of CF836417 vs. ExPASy Swiss-Prot
Match: DHCR7_XENLA (7-dehydrocholesterol reductase OS=Xenopus laevis GN=dhcr7 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.852e-23
Identity = 46/103 (44.66%), Postives = 68/103 (66.02%), Query Frame = -3
Query:  492 KAPSKIVASYTTSSGETKQSLLLTSGWWGLARHFHYVPEILAAFFWTVPALFNHFLPYFYVIFLTILLFDRAKRDDDRCRSKYGKYWKIYCQKVPYRIIPGIY 800
            K P  I   Y ++ G+   S L+ SG+WG+ARH +Y  +++ +  + +   F+H LPYFY I++TILL  R  RD+ RC SKYGK WK+Y   VPYR++PG++
Sbjct:  371 KKPKSIECFYVSADGKRHYSKLMISGFWGVARHLNYTGDLMGSLAYCLACGFDHLLPYFYFIYMTILLVHRCIRDEHRCSSKYGKDWKLYTSAVPYRLLPGLF 473          
BLAST of CF836417 vs. ExPASy Swiss-Prot
Match: LBR_HUMAN (Lamin-B receptor OS=Homo sapiens GN=LBR PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.418e-23
Identity = 47/92 (51.09%), Postives = 63/92 (68.48%), Query Frame = -3
Query:  492 TSSGETKQSLLLTSGWWGLARHFHYVPEILAAFFWTVPALFNHFLPYFYVIFLTILLFDRAKRDDDRCRSKYGKYWKIYCQKVPYRIIPGIY 767
            TS+G+     LL SGWWG  RH +Y+ +++ A  W++P  FNH LPYFY+I+ T+LL  R  RD+  C+ KYG  W+ YCQ+VPYRI P IY
Sbjct:  528 TSTGKN----LLVSGWWGFVRHPNYLGDLIMALAWSLPCGFNHILPYFYIIYFTMLLVHREARDEYHCKKKYGVAWEKYCQRVPYRIFPYIY 615          
BLAST of CF836417 vs. ExPASy Swiss-Prot
Match: DHCR7_HUMAN (7-dehydrocholesterol reductase OS=Homo sapiens GN=DHCR7 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.418e-23
Identity = 47/103 (45.63%), Postives = 69/103 (66.99%), Query Frame = -3
Query:  492 KAPSKIVASYTTSSGETKQSLLLTSGWWGLARHFHYVPEILAAFFWTVPALFNHFLPYFYVIFLTILLFDRAKRDDDRCRSKYGKYWKIYCQKVPYRIIPGIY 800
            + P  I  SYT++ G+   S LL SG+WG+ARHF+YV +++ +  + +     H LPYFY+I++ ILL  R  RD+ RC SKYG+ W+ Y   VPYR++PGI+
Sbjct:  373 RKPKVIECSYTSADGQRHHSKLLVSGFWGVARHFNYVGDLMGSLAYCLACGGGHLLPYFYIIYMAILLTHRCLRDEHRCASKYGRDWERYTAAVPYRLLPGIF 475          
BLAST of CF836417 vs. ExPASy Swiss-Prot
Match: DHCR7_RAT (7-dehydrocholesterol reductase OS=Rattus norvegicus GN=Dhcr7 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.125e-23
Identity = 47/103 (45.63%), Postives = 69/103 (66.99%), Query Frame = -3
Query:  492 KAPSKIVASYTTSSGETKQSLLLTSGWWGLARHFHYVPEILAAFFWTVPALFNHFLPYFYVIFLTILLFDRAKRDDDRCRSKYGKYWKIYCQKVPYRIIPGIY 800
            K P  I  SYT++ G   +S LL SG+WG+ARHF+Y  +++ +  + +     H LPYFY+I++TILL  R  RD+ RC +KYG+ W+ Y   VPYR++PGI+
Sbjct:  369 KKPKAIECSYTSADGLKHRSKLLVSGFWGVARHFNYTGDLMGSLAYCLACGGGHLLPYFYIIYMTILLTHRCLRDEHRCANKYGRDWERYVAAVPYRLLPGIF 471          
BLAST of CF836417 vs. ExPASy Swiss-Prot
Match: DHCR7_MOUSE (7-dehydrocholesterol reductase OS=Mus musculus GN=Dhcr7 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.388e-23
Identity = 47/103 (45.63%), Postives = 68/103 (66.02%), Query Frame = -3
Query:  492 KAPSKIVASYTTSSGETKQSLLLTSGWWGLARHFHYVPEILAAFFWTVPALFNHFLPYFYVIFLTILLFDRAKRDDDRCRSKYGKYWKIYCQKVPYRIIPGIY 800
            K P  I  SYT++ G    S LL SG+WG+ARHF+Y  +++ +  + +     H LPYFY+I++TILL  R  RD+ RC +KYG+ W+ Y   VPYR++PGI+
Sbjct:  369 KKPKAIECSYTSADGLKHHSKLLVSGFWGVARHFNYTGDLMGSLAYCLACGGGHLLPYFYIIYMTILLTHRCLRDEHRCANKYGRDWERYTAAVPYRLLPGIF 471          
The following BLAST results are available for this feature:
BLAST of CF836417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
ST7R_ARATH9.423e-5289.327-dehydrocholesterol reductase OS=Arabidopsis thal... [more]
DHCR7_XENTR3.731e-2445.637-dehydrocholesterol reductase OS=Xenopus tropical... [more]
DHCR7_MIMIV3.731e-2447.96Probable 7-dehydrocholesterol reductase OS=Acantha... [more]
LBR_MOUSE6.364e-2452.17Lamin-B receptor OS=Mus musculus GN=Lbr PE=1 SV=2[more]
LBR_RAT1.086e-2356.10Lamin-B receptor OS=Rattus norvegicus GN=Lbr PE=1 ... [more]
DHCR7_XENLA1.852e-2344.667-dehydrocholesterol reductase OS=Xenopus laevis G... [more]
LBR_HUMAN2.418e-2351.09Lamin-B receptor OS=Homo sapiens GN=LBR PE=1 SV=2[more]
DHCR7_HUMAN2.418e-2345.637-dehydrocholesterol reductase OS=Homo sapiens GN=... [more]
DHCR7_RAT4.125e-2345.637-dehydrocholesterol reductase OS=Rattus norvegicu... [more]
DHCR7_MOUSE5.388e-2345.637-dehydrocholesterol reductase OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02O23_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836417 ID=CF836417; Name=CF836417; organism=Citrus sinensis; type=EST; length=802bp
TTTTTTTTTTTTTTTTTGATAATCCAACTCATTTCGATTTCGACCATATT
TTAATCCAACTGAACCTACATTCCATTAGAGGAAAGATCAAAACATAAGC
CAAACTAACACCATCTCCTTTTGATGCCCAAGTAGAAATAACGCATAACT
AGAAGCCAATTCAACTCAAAACAATAGAGCAGTTCTACGAAATACACTAA
TCTGAACCATAGTTATAATATCCCTTCATGCACAATTATCCCTAGCTCAT
CAAAAGCTGCAAAAGTGAAACCAAGGAACTAATGATCTAAACATTCATCA
CAGGAATACGCCAAATGCTTCCTCCTACATCACATCAAAACTTACAAGCA
CTCGAGGAAGTGTCTAGTCAGAGACAACAGTTAGGCGGAGATAAATGGTA
CATGGACTCACGAACATAACCATCTGATATGAAGAGGCCAAGAAATTTGA
AATGAGCCACGGTCAGAGATTCAACATTGATAAATGTCTCAGTAGATTCC
AGGAATGATCCGGTAGGGAACCTTCTGGCAGTATATTTTCCAGTATTTCC
CGTATTTGGATCGACATCTATCATCGTCTCTTTTAGCTCGGTCGAAAAGA
AGGATCGTAAGAAATATAACGTAGAAGTATGGTAGAAAATGATTAAAAAG
AGCTGGAACAGTCCAAAAAAACGCAGCCAATATTTCAGGTACATAATGGA
AATGACGGGCCAAACCCCACCAGCCTGAGGTTAAAAGAAGGCTTTGTTTT
GTTTCCCCAGATGATGTTGTGTATGAAGCAACAATCTTTGATGGTGCTTT
GC
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