CF836454

Overview
NameCF836454
Unique NameCF836454
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836454 vs. ExPASy Swiss-Prot
Match: ERF3_YEAST (Eukaryotic peptide chain release factor GTP-binding subunit OS=Saccharomyces cerevisiae GN=SUP35 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.505e-23
Identity = 51/128 (39.84%), Postives = 80/128 (62.50%), Query Frame = -1
Query:  378 IEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 761
            +EEEDI  GFVL+S   P+ +VT+F+AQ+ I+EL   +I  AG+  V+H+H  +EE  IV+LLH+++              K G  V+  ++    +C E + D+ QLGRFTLR +G T+A+GK+ ++
Sbjct:  558 VEEEDISPGFVLTSPKNPIKSVTKFVAQIAIVEL--KSIIAAGFSCVMHVHTAIEEVHIVKLLHKLEKGTNRKSKKPPAFAKKGMKVIAVLETEAPVCVETYQDYPQLGRFTLRDQGTTIAIGKIVKI 683          
BLAST of CF836454 vs. ExPASy Swiss-Prot
Match: ERF3_DEBHA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Debaryomyces hansenii GN=SUP35 PE=3 SV=4)

HSP 1 Score: 107.842 bits (268), Expect = 6.505e-23
Identity = 50/128 (39.06%), Postives = 80/128 (62.50%), Query Frame = -1
Query:  378 IEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 761
            +EEED+  G+VL+S  KP+  +T F AQ+ I+EL   +I + G+  V+H+H  +EE   +EL H+++              K G  V+  ++ N S+C E +AD+ QLGRFTLR +G T+A+GK+T++
Sbjct:  575 VEEEDLAPGYVLTSPLKPIKTITRFEAQIAIVEL--KSILSNGFSCVMHLHTAIEEVTFIELKHKLEKGTNRKSKKPPAFAKKGMKVIAILETNESVCAETYADYPQLGRFTLRDQGTTIAIGKITKV 700          
BLAST of CF836454 vs. ExPASy Swiss-Prot
Match: ERF3_KLULA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Kluyveromyces lactis GN=SUP35 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.110e-22
Identity = 51/128 (39.84%), Postives = 79/128 (61.72%), Query Frame = -1
Query:  378 IEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 761
            +EEE+I +GFVL+S   PV  VT F+AQ+ I+EL   +I +AG+  V+HIH  +EE  +  LLH+++              K G  ++  I+ N  +C E + D+ QLGRFTLR +G T+A+GK+ ++
Sbjct:  572 VEEEEISAGFVLTSPKNPVKNVTRFVAQIAIVEL--KSIMSAGFSCVMHIHTAIEEVTVTRLLHKLEKGSNRKSKKPPAFAKKGMKIIAVIETNEPVCVETYDDYPQLGRFTLRDQGTTIAIGKIVKI 697          
BLAST of CF836454 vs. ExPASy Swiss-Prot
Match: ERF3_PICPI (Eukaryotic peptide chain release factor GTP-binding subunit OS=Pichia pinus GN=SUP2 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.216e-22
Identity = 51/128 (39.84%), Postives = 77/128 (60.16%), Query Frame = -1
Query:  378 IEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 761
            IEEED+ +G+VLSS+  PV  VT F AQ+ I+EL   +I + G+  V+H+H  +EE    +LLH +               K G  ++  ++    +C E + D+ QLGRFTLR +G+T+A+GKVT+L
Sbjct:  615 IEEEDLSAGYVLSSINHPVKTVTRFEAQIAIVEL--KSILSTGFSCVMHVHTAIEEVTFTQLLHNLQKGTNRRSKKAPAFAKQGMKIIAVLETTEPVCIESYDDYPQLGRFTLRDQGQTIAIGKVTKL 740          
BLAST of CF836454 vs. ExPASy Swiss-Prot
Match: ERF3_ZYGRO (Eukaryotic peptide chain release factor GTP-binding subunit OS=Zygosaccharomyces rouxii GN=SUP35 PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.507e-22
Identity = 49/128 (38.28%), Postives = 78/128 (60.94%), Query Frame = -1
Query:  378 IEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 761
            +EEEDI  GFVL+S   PV  VT F+AQ+ I+EL   +I ++G+  V+H+H  +EE  I +LLH+++              K G  ++  ++    +C E + D+ QLGRFTLR +G T+A+GK+ ++
Sbjct:  535 VEEEDIAPGFVLTSPKNPVKNVTRFVAQVAIVEL--KSILSSGFSCVMHVHTAIEEVRITKLLHKLERGTNRKSKKPPAFAKKGMKIIAVLETERPVCVETYQDYPQLGRFTLRDQGTTIAIGKIVKI 660          
BLAST of CF836454 vs. ExPASy Swiss-Prot
Match: ERF3_CANMA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Candida maltosa GN=SUP35 PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 7.192e-22
Identity = 50/128 (39.06%), Postives = 80/128 (62.50%), Query Frame = -1
Query:  378 IEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 761
            +EEED+  G+VL+S   PV  VT+F AQ+ I+EL   +I + G+  V+H+H  +EE + VEL H+++              K G  ++  ++V+  +C E + D+ QLGRFTLR +G T+A+GK+T+L
Sbjct:  586 VEEEDLQPGYVLTSPKNPVKTVTKFEAQIAIVEL--KSILSNGFSCVMHLHTAIEEVKFVELKHKLEKGTNRKSKKPPAFAKKGMKIIAILEVSEPVCAETYKDYPQLGRFTLRDQGTTIAIGKITKL 711          
BLAST of CF836454 vs. ExPASy Swiss-Prot
Match: ERF3_CANAL (Eukaryotic peptide chain release factor GTP-binding subunit OS=Candida albicans GN=SUP35 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.602e-21
Identity = 50/128 (39.06%), Postives = 78/128 (60.94%), Query Frame = -1
Query:  378 IEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 761
            IEEED+  G+VL+S   PV  VT F AQ+ I+EL   +I + G+  V+H+H  +EE + +EL H+++              K G  ++  ++V   +C E + D+ QLGRFTLR +G T+A+GK+T+L
Sbjct:  589 IEEEDLQPGYVLTSPKNPVKTVTRFEAQIAIVEL--KSILSNGFSCVMHLHTAIEEVKFIELKHKLEKGTNRKSKKPPAFAKKGMKIIAILEVGELVCAETYKDYPQLGRFTLRDQGTTIAIGKITKL 714          
BLAST of CF836454 vs. ExPASy Swiss-Prot
Match: ERF3_SCHPO (Eukaryotic peptide chain release factor GTP-binding subunit OS=Schizosaccharomyces pombe GN=sup35 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.952e-21
Identity = 51/127 (40.16%), Postives = 74/127 (58.27%), Query Frame = -1
Query:  378 EEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 758
            ++ D+ +G+VL+S   PV A T FIAQ+ ILEL   +I T GY  V+HIH  VEE    +LLH++D                G  ++  ++    +C E+F D+  +GRFTLR +G TVAVGKV ++
Sbjct:  537 DDSDVQTGYVLTSTKNPVHATTRFIAQIAILEL--PSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFAT-KGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKI 660          
BLAST of CF836454 vs. ExPASy Swiss-Prot
Match: ERF3A_MOUSE (Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Mus musculus GN=Gspt1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.363e-19
Identity = 53/128 (41.41%), Postives = 72/128 (56.25%), Query Frame = -1
Query:  378 IEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 761
            IEEE+IL GF+L  +     +   F AQ+ I+E    +I   GY AVLHIH  +EE EI  L+  +D              K   + + R++   +IC E F DF Q+GRFTLR EGKT+A+GKV +L
Sbjct:  369 IEEEEILPGFILCDLNNLCHSGRTFDAQIVIIE--HKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKL 494          
BLAST of CF836454 vs. ExPASy Swiss-Prot
Match: ERF3B_PONAB (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Pongo abelii GN=GSPT2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.443e-19
Identity = 52/128 (40.62%), Postives = 71/128 (55.47%), Query Frame = -1
Query:  378 IEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 761
            IEEE+IL GF+L   +    +   F  Q+ I+E    +I   GY AVLHIH  +EE EI  L+  +D              K   + + R++   +IC E F DF Q+GRFTLR EGKT+A+GKV +L
Sbjct:  498 IEEEEILPGFILCDPSNLCHSGRTFDVQIVIIE--HKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKL 623          
The following BLAST results are available for this feature:
BLAST of CF836454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
ERF3_YEAST6.505e-2339.84Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_DEBHA6.505e-2339.06Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_KLULA1.110e-2239.84Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_PICPI4.216e-2239.84Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_ZYGRO5.507e-2238.28Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_CANMA7.192e-2239.06Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_CANAL1.602e-2139.06Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_SCHPO7.952e-2140.16Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3A_MOUSE4.363e-1941.41Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3B_PONAB7.443e-1940.63Eukaryotic peptide chain release factor GTP-bindin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02P22_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02P22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836454 ID=CF836454; Name=CF836454; organism=Citrus sinensis; type=EST; length=761bp
TTTTTTTTTTTTTTTTTGAGGGAAGAGAACATCAAAAATATTACTCATAT
TAAGCGAACTTTGAACAGACTGACTGACAAAAATATCAATTATAACTATA
TGTAAGCTGTAAAAATGGCAATGGGTGAACAAATTAGTGCATACTTAACA
CCCATCAAACAACAAAACCATCAATAACGCAGTGCACTACATAAGCGCCA
TTAAAAGCTGTGTGTTTCTCCCAAAGGCTGAATCAATGAATTTCAATAAG
TTGCAGGAGATGCTATTTCAATTCAAACCCCGTTCAGCTGGGACAAAAAT
AGCTACTCAAAAAGCCTTGTTGATTCAACTCACCTCTAAATGCCAAAATT
GTTTTAAGCACTACTGCTTACTGTAGGAAGCTCAGTCACCTTACCCACTG
CTACTGTTTTCCCTTCAGTGCGAAGTGTGAACCTTCCCAGCTGCGCAAAA
TCTGCAAACTTTTCAGTGCATATCGAATTGTTCACCTGAATACGGCAAAC
AACAATAGCACCATTCTTAACAAAGAGAACTTTCTTTTTCATCGGTTTCT
TCGTCTTCAGATCGATTTGATGTAGCAGTTCAACAATCTCACATTCCTCG
ACAACAGCATGAATGTGTAAAACAGCCTTGTAGCCGGCCGTAAAAATTGC
ATTGTCCAGCAACTCAAGAATCTGCAACTGGGCAATAAATTCAGTGACTG
CGGCTACTGGTTTTGCAACACTTGACAAGACAAAACCAGATAGTATATCT
TCCTCTTCAAT
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