CF838307

Overview
NameCF838307
Unique NameCF838307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838307 vs. ExPASy Swiss-Prot
Match: PAO_ARATH (Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=PAO PE=1 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.822e-69
Identity = 133/208 (63.94%), Postives = 149/208 (71.63%), Query Frame = 1
Query:  214 MALLLSTTANITTSPRKTLPFLATGTPKRQITVKSLQKRSKNL-SPLRVXXXXXXXXXXXEETMRKDEKEDYGSLVDDEYG--KESSDSKFSWRDHWYPVSLVEDLDPNLPTPFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLF 828
            + LL ST+A IT S  K +PFL+  T K  + V     RSK   +PLRV            E  R          +++EYG  KE   S+F WRDHWYPVSLVEDLDPN+PTPFQLLGRDLVLWFD N  KW AFDD CPHRLAPLSEGR+DENGHLQCSYHGWSF GCGSCTRIPQAA+ GPEARA++SPRACA +FPTMVSQGLLF
Sbjct:    3 VVLLSSTSATITKSQSKKIPFLSP-TTKFPLKVSISPSRSKLFHNPLRVAAPPSVPTSDSTEEKR----------IEEEYGGDKEEEGSEFKWRDHWYPVSLVEDLDPNVPTPFQLLGRDLVLWFDRNDQKWAAFDDLCPHRLAPLSEGRLDENGHLQCSYHGWSFGGCGSCTRIPQAATSGPEARAVKSPRACAIKFPTMVSQGLLF 199          
BLAST of CF838307 vs. ExPASy Swiss-Prot
Match: CAO_DUNSA (Chlorophyllide a oxygenase, chloroplastic OS=Dunaliella salina GN=CAO PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.208e-16
Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 1
Query:  484 RDHWYPVSLVEDLDPNLPTPFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIP 732
            R+ WYP    + L+P +  PF L G   VL+ D +S       D C HR  PLS G++  NGH+QC YHGW FDG G+CT++P
Sbjct:  131 RNFWYPTEFAKKLEPGMMVPFDLFGVPWVLFRDEHSAP-TCIKDSCAHRACPLSLGKVI-NGHVQCPYHGWEFDGSGACTKMP 211          
BLAST of CF838307 vs. ExPASy Swiss-Prot
Match: CAO_CHLRE (Chlorophyllide a oxygenase, chloroplastic OS=Chlamydomonas reinhardtii GN=CAO PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.588e-11
Identity = 36/95 (37.89%), Postives = 51/95 (53.68%), Query Frame = 1
Query:  451 GKESS-DSKFSWRDHWYPVSLVEDLDPNLPTPFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIP 732
            G ESS + +   R+ WYP      L  +   PF+L G   V++ D          D+C HR  PLS G++ E G + C YHGW F+G G+CT++P
Sbjct:  290 GLESSMEIEEGLRNFWYPAEFSARLPKDTLVPFELFGEPWVMFRDEKGQP-SCIRDECAHRGCPLSLGKVVE-GQVMCPYHGWEFNGDGACTKMP 382          
The following BLAST results are available for this feature:
BLAST of CF838307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PAO_ARATH1.822e-6963.94Pheophorbide a oxygenase, chloroplastic OS=Arabido... [more]
CAO_DUNSA5.208e-1645.78Chlorophyllide a oxygenase, chloroplastic OS=Dunal... [more]
CAO_CHLRE6.588e-1137.89Chlorophyllide a oxygenase, chloroplastic OS=Chlam... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06C21_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06C21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838307 ID=CF838307; Name=CF838307; organism=Citrus sinensis; type=EST; length=829bp
AGGGCTAACCGGTTTTTCTTCTTTTTTCCGTTTTCTGAATTCTGGAAGCG
TGAATACAGACAGACAGCTGGGAGAATTGGAGGGGCAAATTGCAAACTTG
CACGCAAAGTCCTCTTCTTTTTCTGTCTCTCTCTCGAAAGCTCACTTTAT
TTTCGCTTCACTAGAATTGGAAAAATCATACAAAAATTTTCATTAAACTC
AAAGCAAAAGGACATGGCGCTACTTCTTTCTACTACTGCTAATATCACCA
CATCACCAAGAAAAACCCTTCCATTTTTGGCCACAGGAACCCCGAAGCGA
CAAATCACGGTAAAAAGCTTGCAAAAGAGAAGCAAGAATTTGTCTCCACT
ACGAGTGGCAGCTCCTCCTTCAGACCCTGCAGCATCAGATGAAGAAACGA
TGAGAAAAGATGAGAAAGAAGATTATGGATCATTGGTCGATGATGAGTAT
GGTAAAGAGAGTTCGGATTCTAAGTTTTCTTGGAGGGATCATTGGTACCC
AGTTTCTTTAGTTGAAGATTTGGACCCGAACTTGCCTACACCGTTTCAGC
TTCTTGGGAGAGACTTAGTTCTTTGGTTTGATAACAATTCTAATAAATGG
GTTGCATTTGATGATAAATGCCCTCATAGACTCGCCCCATTATCGGAAGG
GCGGATCGATGAAAATGGGCATTTGCAGTGTTCATACCATGGATGGTCTT
TTGACGGGTGTGGATCTTGCACTCGCATTCCCCAAGCAGCATCTGAAGGT
CCTGAAGCTCGTGCAATTCAGTCTCCCAGAGCGTGTGCTACGAGGTTTCC
TACAATGGTGTCTCAAGGTCTGCTATTCG
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