CF838320
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 272.707 bits (696), Expect = 1.819e-72 Identity = 131/219 (59.82%), Postives = 150/219 (68.49%), Query Frame = 3 Query: 195 SIVNSSRCRDIPQKRFTEKITKCLVGRGGVIVNATKGVSSVCEPLPPDRPLWFPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSREYFADPTTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 SIV +++ + KR VG V V+A PDRPLWFPGSTPP WLDG LPGD+GFDPLGLGSDPE LKW AQAEL+H RWAML AGI IPE+L IG++ SWY AG +EYF D TTLFV++L L+GW EGRRWADII PGCV+ P PN DVGYPGG+WFDP+ WG GSP + LRT EIKNGRLAMLA +G Sbjct: 25 SIVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAA--------DPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMG 235
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 268.085 bits (684), Expect = 4.480e-71 Identity = 120/184 (65.22%), Postives = 137/184 (74.46%), Query Frame = 3 Query: 300 KGVSSVCEPLPPDRPLWFPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSREYFADPTTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 + ++VC PDRPLWFPGSTPP WLDG LPGD+GFDPLGL SDPE L+W QAEL+H RWAML AGI IPE L IG++ SWY AG +EYF D TTLF+V+L L+GW EGRRWADII PGCV+ P PN DVGYPGG+WFDP+ WG GSP + LRT EIKNGRLAMLA +G Sbjct: 52 RSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMG 235
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 5.515e-45 Identity = 91/168 (54.17%), Postives = 111/168 (66.07%), Query Frame = 3 Query: 348 WFPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSREYFADPTTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 W PG P +L G LPGD GFDPLGL DPE L+WF QAEL++GRWAML VAG+L+PE SIG+I WY AG EYFA +TLFV++ L +VE RRW DI NPG V+ P + P +VGYPGGI F+P+ + P + + EI NGRLAMLAF+G Sbjct: 56 WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGI-FNPLNFA-----PTLEAKEKEIANGRLAMLAFLG 217
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 7.203e-45 Identity = 90/168 (53.57%), Postives = 110/168 (65.48%), Query Frame = 3 Query: 348 WFPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSREYFADPTTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 W PG P +L G L GD GFDPLGL DPE LKWF QAEL++GRWAML VAG+L+PE IG+I WYDAG +YFA +TLFV++ L +VE RRW DI NPG V+ P + PK +VGYPGGI F+P+ + P + E+ NGRLAMLAF+G Sbjct: 57 WLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGI-FNPLNFA-----PTQEAKEKELANGRLAMLAFLG 218
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 1.079e-32 Identity = 77/169 (45.56%), Postives = 102/169 (60.36%), Query Frame = 3 Query: 348 WFPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYD-AGSREYFADPTTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 W PG P++LDG L GD GFDPL L DPE L+WF QA++++GRWAML VAG+LIPE L GL+ W G YFA +T V ++ +VE RRW DI NPG V+ P + + P + GYPG + F+P+ + + + E+ NGRLAMLAF+G Sbjct: 36 WLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVHMS-STYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGRV-FNPLNFA------PLENKEKELANGRLAMLAFLG 196
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 3.139e-32 Identity = 83/189 (43.92%), Postives = 112/189 (59.26%), Query Frame = 3 Query: 336 DRPLWFPGSTPPSWLDGRLPGDYGFDPLGLGSDPELL------KWFAQAELIHGRWAMLAVAGILIPEWLESIGLIEN---FSWYD------AGSREYFADPTTLFVVQLALMGWVEGRRWADIINPGCVDIQ--PDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 DRPLWF S+LDG LPGDYGFDPLGL SDPE +W A E+I+GR+AML G + PE+L +GLI +W+ AG+ Y+AD TLFV+++ALMG+ E RR+ D PG + Q L + YPGG +F+P+ +G+ + + L+ E+KNGRLAMLA +G Sbjct: 54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGK-DEKSLKELKLKEVKNGRLAMLAILG 240
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 1.193e-31 Identity = 99/250 (39.60%), Postives = 132/250 (52.80%), Query Frame = 3 Query: 171 TILLLFSCSIVNSSRC-RDIPQKRFTEKITKCLVGRGGVIVNATKGVSSVCEPLPP-----DRPLWFPGSTPPSWLDGRLPGDYGFDPLGLGSDPELL------KWFAQAELIHGRWAMLAVAGILIPEWLESIGLIEN---FSWYD------AGSREYFADPTTLFVVQLALMGWVEGRRWADIINPGCVDIQ--PDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 T L+ S SI S+ R I R ++ +T+ + +V A PP +R LWF S+LDGRLPGD+GFDPLGL SDPE KW A E+I+GR+AML AG + PE L GLI +W+ AG+ Y+AD TLFV+++ALMG+ E RR+ D PG + Q L D YPGG F+P+ +G+ + + L+ EIKNGRLAMLA +G Sbjct: 3 TQALISSSSISTSAEAARQIIGSRISQSVTR----KASFVVRAAS--------TPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGK-DEKSMKELKLKEIKNGRLAMLAILG 238
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.558e-31 Identity = 78/177 (44.07%), Postives = 100/177 (56.50%), Query Frame = 3 Query: 369 PSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSREYFADP---TTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLP------NKTKPKPDVGYPGGIWFDPMMW------GRGSPEPVMV--LRTXEIKNGRLAMLAFV 848 P WLDG LPGD+GFDPLGLG DP LKW+ +AELIHGRWAMLAV GI + + I W++AG+ P TL QL LMGWVE +RW D +P ++ P N + + GYPGG +FDP+ G +P+ + L+ EIK+ RLAMLA + Sbjct: 73 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGI------PWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAML 243
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 2.657e-31 Identity = 78/177 (44.07%), Postives = 95/177 (53.67%), Query Frame = 3 Query: 369 PSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSREYFADP---TTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLP------NKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMV--------LRTXEIKNGRLAMLAFV 848 P WLDG LPGDYGFDPLGLG DP LKW+ +AELIHGRWAM AV GI + + I W++AG+ P TL QL LMGWVE +RW D +P ++ P N + GYPGG +FDP+ V V L+ EIK+ RLAMLA + Sbjct: 68 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAML 238
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 4.242e-29 Identity = 76/177 (42.94%), Postives = 93/177 (52.54%), Query Frame = 3 Query: 369 PSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSREYFADP---TTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLP------NKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMV--------LRTXEIKNGRLAMLAFV 848 P WLDG LPGD+GFDPLGLG DP LKW+ +AELIHGRWAM AV GI + + I W++AG+ P +L QL LMGWVE +RW D + I P N + GYPGG +FDP+ V V L+ EIK+ RLAMLA + Sbjct: 68 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAML 238 The following BLAST results are available for this feature:
BLAST of CF838320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >CF838320 ID=CF838320; Name=CF838320; organism=Citrus sinensis; type=EST; length=852bpback to top |