CF838480

Overview
NameCF838480
Unique NameCF838480
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838480 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.810e-20
Identity = 65/160 (40.62%), Postives = 78/160 (48.75%), Query Frame = 3
Query:    3 KRRGIKN-YRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFPFPDSTTVATAYEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGDQIQSDFWEMIGED-EIQQWMT---MMDFGT-DSSDSANT 464
            KR+  KN YRGVRQRPWGK+AAEIRDP+RATRVWLGTF T              FRGPRAKLNFPF D T+  ++                                             D ++++ W   G D  +++WM    MMDFG  DSSDS NT
Sbjct:  128 KRKNKKNGYRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFPFVDYTSSVSS-------------------------PVAADDIGAKASASASVSATDSVEAEQWNGGGGDCNMEEWMNMMMMMDFGNGDSSDSGNT 262          
BLAST of CF838480 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.532e-16
Identity = 39/59 (66.10%), Postives = 41/59 (69.49%), Query Frame = 3
Query:   18 KNYRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFP 194
            K YRGVRQRPWGKWAAEIRDP +ATRVWLGTF T              FRG +AKLNFP
Sbjct:   59 KKYRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFP 117          
BLAST of CF838480 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.024e-16
Identity = 38/59 (64.41%), Postives = 42/59 (71.19%), Query Frame = 3
Query:   18 KNYRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFP 194
            +NYRGVRQRPWGKWAAEIRDP +A RVWLGTF+T              FRG +AKLNFP
Sbjct:   68 RNYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFP 126          
BLAST of CF838480 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.342e-15
Identity = 40/65 (61.54%), Postives = 44/65 (67.69%), Query Frame = 3
Query:    3 KRRGIKN-YRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFP 194
            KRR  KN YRG+R+RPWGKWAAEIRDPR+  RVWLGTFNT               RG +AKLNFP
Sbjct:   71 KRRKRKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFP 135          
BLAST of CF838480 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.342e-15
Identity = 38/59 (64.41%), Postives = 41/59 (69.49%), Query Frame = 3
Query:   18 KNYRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFP 194
            + YRGVRQRPWGKWAAEIRDP RA RVWLGTF+T              FRG +AKLNFP
Sbjct:   75 RRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFP 133          
BLAST of CF838480 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.990e-15
Identity = 36/59 (61.02%), Postives = 42/59 (71.19%), Query Frame = 3
Query:   18 KNYRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFP 194
            ++YRGVRQRPWGKWAAEIRDP++A RVWLGTF T              F+G +AKLNFP
Sbjct:   88 RHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFP 146          
BLAST of CF838480 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.990e-15
Identity = 36/59 (61.02%), Postives = 42/59 (71.19%), Query Frame = 3
Query:   18 KNYRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFP 194
            ++YRGVRQRPWGKWAAEIRDP++A RVWLGTF T              F+G +AKLNFP
Sbjct:   37 RHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFP 95          
BLAST of CF838480 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.905e-15
Identity = 36/59 (61.02%), Postives = 42/59 (71.19%), Query Frame = 3
Query:   18 KNYRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFP 194
            ++YRGVRQRPWGKWAAEIRDP++A RVWLGTF T              F+G +AKLNFP
Sbjct:   90 RHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFP 148          
BLAST of CF838480 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.136e-14
Identity = 36/69 (52.17%), Postives = 44/69 (63.77%), Query Frame = 3
Query:    3 KRRGIKNYRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFPFPDST 209
            KR+    +RG+RQRPWGKWAAEIRDPR+  RVWLGTFN+               RG +AK+NFP   +T
Sbjct:  113 KRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFPEAPTT 181          
BLAST of CF838480 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.136e-14
Identity = 37/64 (57.81%), Postives = 41/64 (64.06%), Query Frame = 3
Query:   18 KNYRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFPFPDST 209
            + +RGVRQRPWGKWAAEIRDP R  RVWLGTF+T               RGP A+LNFP P  T
Sbjct:   85 RKFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFPPPPVT 148          
The following BLAST results are available for this feature:
BLAST of CF838480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
EF109_ARATH1.810e-2040.63Ethylene-responsive transcription factor ERF109 OS... [more]
RAP26_ARATH3.532e-1666.10Ethylene-responsive transcription factor RAP2-6 OS... [more]
EF112_ARATH6.024e-1664.41Ethylene-responsive transcription factor ERF112 OS... [more]
RAP23_ARATH1.342e-1561.54Ethylene-responsive transcription factor RAP2-3 OS... [more]
EF110_ARATH1.342e-1564.41Ethylene-responsive transcription factor ERF110 OS... [more]
EF114_ARATH2.990e-1561.02Ethylene-responsive transcription factor ERF114 OS... [more]
EF113_ARATH2.990e-1561.02Ethylene-responsive transcription factor ERF113 OS... [more]
EF115_ARATH3.905e-1561.02Ethylene-responsive transcription factor ERF115 OS... [more]
ERF1_ORYSJ1.136e-1452.17Ethylene-responsive transcription factor 1 OS=Oryz... [more]
CRF1_ARATH1.136e-1457.81Ethylene-responsive transcription factor CRF1 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06L09_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838480 ID=CF838480; Name=CF838480; organism=Citrus sinensis; type=EST; length=772bp
GAAAGAGGAGAGGGATTAAGAATTACAGAGGGGTGAGGCAGAGGCCGTGG
GGAAAATGGGCGGCTGAGATTCGTGACCCGAGGAGGGCGACCCGTGTCTG
GCTGGGGACGTTCAACACGGCGGAGGAGGCAGCGAGGGCGTACGATAAGG
CCGCCGTTGAGTTCCGTGGGCCCAGGGCCAAGCTTAATTTCCCATTTCCC
GATAGCACGACGGTGGCAACAGCATACGAGCAGCAGCAGCAGGGGGAGTC
ATCGCATTCACAGCAGCCACAACAAGTGGTGTCGCAAGACAGCAATCAAA
GTGTTGCGAGAACTAATAATAATAATGGGAATTCGGCGGCGGCAACAGAA
GCAATGGGGGATCAGATTCAGAGTGACTTTTGGGAGATGATTGGAGAAGA
CGAGATTCAACAGTGGATGACGATGATGGATTTTGGCACCGATTCCTCTG
ACTCTGCTAATACTGCCACTGGTCTTACTTCATGATTAGTTAATTAAGTA
ATTAGAATGTTTGTTTGTTTCCTTGTTTTTTTTTTTAAAAAAAAAAATTA
GTTAATTACAGTGTTTAATCAATTAATTCAGCCAATTATTTGATTGTATC
TGTAAAGAAGAGATAAGATCATCAATTTGGAGATCGATTATGTGAACAAT
AAATATATCTCTTACTAACTCAGTTCAACATCGGTCCCAATTATTTTATT
GATTTGATTTTCCAAAATTTTATCCGGAGGTGCTGCTGCTGAACTGAGGA
TTGGCTTGCTGATTAGTGACTA
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