CK739731

Overview
NameCK739731
Unique NameCK739731
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length533
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: TCPZ_DICDI (T-complex protein 1 subunit zeta OS=Dictyostelium discoideum GN=cct6 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.744e-30
Identity = 62/100 (62.00%), Postives = 81/100 (81.00%), Query Frame = 1
Query:    1 VEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMR 300
            + GR +LG++AFADALLVVPKTLA+N+G D  D II L+ E+ +G+IVGL+  SG+P+DP  EGIFD YSV +Q+  S PVIASQLLL+DE+I+AG+ MR
Sbjct:  431 ITGRTKLGIQAFADALLVVPKTLAQNSGFDPMDTIIKLQEEYAKGHIVGLDVESGEPMDPVSEGIFDQYSVLKQVYRSSPVIASQLLLIDEIIKAGKGMR 530          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: TCPZ_SCHPO (T-complex protein 1 subunit zeta OS=Schizosaccharomyces pombe GN=cct6 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.010e-24
Identity = 54/101 (53.47%), Postives = 77/101 (76.24%), Query Frame = 1
Query:    1 VEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRK 303
            V+G+A++GV A+ADALL++PKTLA N+  DTQD I+AL+ E   G  VGL+  +G P DP++EGI+DNY V R +++S  VIAS L+ VD+++RAGR+  K
Sbjct:  430 VKGKAKMGVYAYADALLIIPKTLAANSSYDTQDAIVALQEEASEGYKVGLDLKTGMPFDPEVEGIYDNYRVIRHMLHSATVIASNLISVDQILRAGRSSLK 530          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: TCPZ_CHICK (T-complex protein 1 subunit zeta OS=Gallus gallus GN=CCT6 PE=1 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 1.117e-23
Identity = 51/102 (50.00%), Postives = 80/102 (78.43%), Query Frame = 1
Query:    1 VEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEH-DRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRK 303
            V+GRAQLGV+AFADALL++PK LA+N+G D Q+ ++ ++ EH + G + G++ ++G+P+     GI+DNY+VK+Q+++S  VIAS +LLVDE++RAG +  K
Sbjct:  428 VKGRAQLGVQAFADALLIIPKVLAQNSGYDPQETLVKVQAEHAESGQLTGVDLNTGEPMVAAAAGIWDNYNVKKQLLHSCTVIASNILLVDEIMRAGMSSLK 529          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: TCPZ_BOVIN (T-complex protein 1 subunit zeta OS=Bos taurus GN=CCT6A PE=2 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 1.458e-23
Identity = 51/102 (50.00%), Postives = 80/102 (78.43%), Query Frame = 1
Query:    1 VEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEH-DRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRK 303
            V+GRAQLGV+AFADALL++PK LA+N+G D Q+ ++ ++ EH + G +VG++ ++G+P+     GI+DNY VK+Q+++S  VIA+ +LLVDE++RAG +  K
Sbjct:  429 VKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESGQLVGVDLNTGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSLK 530          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: TCPZ_RABIT (T-complex protein 1 subunit zeta OS=Oryctolagus cuniculus GN=CCT6 PE=2 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 1.905e-23
Identity = 51/102 (50.00%), Postives = 80/102 (78.43%), Query Frame = 1
Query:    1 VEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEH-DRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRK 303
            V+GRAQLGV+AFADALL++PK LA+N+G D Q+ ++ ++ EH + G +VG++ ++G+P+     GI+DNY VK+Q+++S  VIA+ +LLVDE++RAG +  K
Sbjct:  429 VKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKIRTEHSESGQLVGVDLNTGEPMVAAEVGIWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSLK 530          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: TCPZ_PONAB (T-complex protein 1 subunit zeta OS=Pongo abelii GN=CCT6 PE=2 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 1.905e-23
Identity = 50/102 (49.02%), Postives = 80/102 (78.43%), Query Frame = 1
Query:    1 VEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEH-DRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRK 303
            V+GRAQLGV+AFADALL++PK LA+N+G D Q+ ++ ++ EH + G +VG++ ++G+P+     G++DNY VK+Q+++S  VIA+ +LLVDE++RAG +  K
Sbjct:  429 VKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKIQAEHSESGQLVGVDLNTGEPMVAAEVGVWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSLK 530          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: TCPZ_HUMAN (T-complex protein 1 subunit zeta OS=Homo sapiens GN=CCT6A PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 1.905e-23
Identity = 50/102 (49.02%), Postives = 80/102 (78.43%), Query Frame = 1
Query:    1 VEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEH-DRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRK 303
            V+GRAQLGV+AFADALL++PK LA+N+G D Q+ ++ ++ EH + G +VG++ ++G+P+     G++DNY VK+Q+++S  VIA+ +LLVDE++RAG +  K
Sbjct:  429 VKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKIQAEHSESGQLVGVDLNTGEPMVAAEVGVWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSLK 530          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: TCPZ_MOUSE (T-complex protein 1 subunit zeta OS=Mus musculus GN=Cct6a PE=1 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 4.243e-23
Identity = 50/102 (49.02%), Postives = 79/102 (77.45%), Query Frame = 1
Query:    1 VEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEH-DRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRK 303
            V+GRAQLGV+AFADALL++PK LA+N+G D Q+ ++ ++ EH + G +VG++  +G+P+     G++DNY VK+Q+++S  VIA+ +LLVDE++RAG +  K
Sbjct:  429 VKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESGQLVGVDLSTGEPMVAAEMGVWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSLK 530          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: TCPW_HUMAN (T-complex protein 1 subunit zeta-2 OS=Homo sapiens GN=CCT6B PE=1 SV=4)

HSP 1 Score: 103.99 bits (258), Expect = 4.692e-22
Identity = 48/102 (47.06%), Postives = 79/102 (77.45%), Query Frame = 1
Query:    1 VEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEH-DRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRK 303
            ++GRA+LGV+AFADALL++PK LA+NAG D Q+ ++ ++ EH +   +VG++ ++G+P+     G++DNY VK+Q+++S  VIA+ +LLVDE++RAG +  K
Sbjct:  429 IKGRARLGVQAFADALLIIPKVLAQNAGYDPQETLVKVQAEHVESKQLVGVDLNTGEPMVAADAGVWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSLK 530          
BLAST of CK739731 vs. ExPASy Swiss-Prot
Match: TCPW_BOVIN (T-complex protein 1 subunit zeta-2 OS=Bos taurus GN=CCT6B PE=2 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 1.783e-21
Identity = 47/102 (46.08%), Postives = 77/102 (75.49%), Query Frame = 1
Query:    1 VEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRG-NIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRK 303
            ++GRA+LGV+AFADALL++PK LA+N+G D Q+ ++ ++ EH      VG++ ++G+P+     G++DNY VK+Q+++S  VIA+ +LLVDE++RAG +  K
Sbjct:  429 IQGRARLGVQAFADALLIIPKVLAQNSGYDLQETLVKVQAEHSNSKQPVGIDLNTGEPMVAADAGVWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSLK 530          
The following BLAST results are available for this feature:
BLAST of CK739731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
TCPZ_DICDI2.744e-3062.00T-complex protein 1 subunit zeta OS=Dictyostelium ... [more]
TCPZ_SCHPO1.010e-2453.47T-complex protein 1 subunit zeta OS=Schizosaccharo... [more]
TCPZ_CHICK1.117e-2350.00T-complex protein 1 subunit zeta OS=Gallus gallus ... [more]
TCPZ_BOVIN1.458e-2350.00T-complex protein 1 subunit zeta OS=Bos taurus GN=... [more]
TCPZ_RABIT1.905e-2350.00T-complex protein 1 subunit zeta OS=Oryctolagus cu... [more]
TCPZ_PONAB1.905e-2349.02T-complex protein 1 subunit zeta OS=Pongo abelii G... [more]
TCPZ_HUMAN1.905e-2349.02T-complex protein 1 subunit zeta OS=Homo sapiens G... [more]
TCPZ_MOUSE4.243e-2349.02T-complex protein 1 subunit zeta OS=Mus musculus G... [more]
TCPW_HUMAN4.692e-2247.06T-complex protein 1 subunit zeta-2 OS=Homo sapiens... [more]
TCPW_BOVIN1.783e-2146.08T-complex protein 1 subunit zeta-2 OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6120 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739731 ID=CK739731; Name=CK739731; organism=Citrus sinensis; type=EST; length=533bp
GTCGAAGGGCGTGCTCAATTGGGAGTTGAAGCTTTTGCCGATGCCCTTCT
TGTAGTGCCTAAGACACTTGCTGAGAATGCTGGGCTTGACACTCAAGATG
TGATCATTGCCTTGAAGGGTGAGCATGATAGGGGAAATATTGTGGGATTA
AACCAGCATTCAGGAGATCCCATTGACCCTCAAATGGAGGGAATCTTTGA
CAACTACTCTGTGAAGCGCCAAATTATTAACTCAGGGCCTGTAATTGCAT
CCCAGTTGCTCTTGGTAGATGAAGTAATCCGTGCTGGTCGTAATATGCGG
AAGCCAACTTAGTTCATTGATAAGCTACAACAAATATAATTTGTCATGTG
GGGGTTCTTTTACTGCTCGATTGTGTTAATGGATGGCCTTGAACTTATGG
AATGTGTAAGGAGGTTGTGTTTTGATGGTTGTGAACTCTCAGGCCGCAAG
CCCATAGAAAACTTGAAAAGGATGGAATGACCCCTATATTTTGTGTTCAA
TTTCATTATCTGCGGACCAATTTTGTTTTTGTA
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