CK739776

Overview
NameCK739776
Unique NameCK739776
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length334
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2583 contig Csv1_Contig2583:162..495. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK739776 vs. ExPASy Swiss-Prot
Match: GUAD_BACSU (Guanine deaminase OS=Bacillus subtilis GN=guaD PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.567e-19
Identity = 47/88 (53.41%), Postives = 54/88 (61.36%), Query Frame = 1 
Query:   73 DHE-FLSKAVEEAYKGVECGDGGPFGAXXXXXXXXXXSCHNMVLKHTDPTAHAEVTAVREACKKLNKIELSDCEIYASCEPCPMCFGA 333
            +HE FL +AV  A +GV  G GGPFGA             N V    DPTAHAEVTA+R+ACK L   +L DC +Y SCEPCPMC GA
Sbjct:    2 NHETFLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTSCEPCPMCLGA 89
[Close]
BLAST of CK739776 vs. ExPASy Swiss-Prot
Match: TADA_AQUAE (tRNA-specific adenosine deaminase OS=Aquifex aeolicus GN=tadA PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.508e-11
Identity = 35/81 (43.21%), Postives = 46/81 (56.79%), Query Frame = 1 
Query:   82 FLSKAVEEAYKGVECGDGGPFGAXXXXXXXXXXSCHNMVLKHTDPTAHAEVTAVREACKKLNKIELSDCEIYASCEPCPMC 324
            FL  A+ EA +  E G+  P GA            HN V +  DPTAHAE+ A++EAC++LN   L  CE+Y + EPC MC
Sbjct:    6 FLKVALREAKRAFEKGEV-PVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYVTLEPCIMC 85
The following BLAST results are available for this feature:
BLAST of CK739776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GUAD_BACSU2.567e-1953.41Guanine deaminase OS=Bacillus subtilis GN=guaD PE=... [more]
TADA_AQUAE1.508e-1143.21tRNA-specific adenosine deaminase OS=Aquifex aeoli... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6166 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739776 ID=CK739776; Name=CK739776; organism=Citrus sinensis; type=EST; length=334bp
GTGGAAACTAAGGATGGAACTATTTCTGTGGCTTCTGCATTTGCTGCTCA
TCAGGAAGCTGTACAGGATAGAGACCATGAGTTCCTAAGTAAAGCTGTTG
AAGAAGCATATAAAGGAGTTGAATGTGGAGATGGGGGTCCTTTTGGTGCT
GTTGTCGTACGTAGTGATGAAGTTGTTGTAAGTTGTCATAACATGGTTTT
GAAGCACACTGATCCTACTGCCCATGCTGAGGTGACGGCAGTGAGAGAGG
CTTGCAAAAAGCTCAATAAGATTGAGCTTTCAGACTGCGAAATATACGCC
TCCTGTGAGCCTTGCCCCATGTGCTTTGGGGCTA
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