CK739982

Overview
NameCK739982
Unique NameCK739982
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length519
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1488 contig Csv1_Contig1488:284..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK739982 vs. ExPASy Swiss-Prot
Match: TRI1_YEAST (Protein TRI1 OS=Saccharomyces cerevisiae GN=TRI1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.691e-11
Identity = 25/51 (49.02%), Postives = 43/51 (84.31%), Query Frame = 2 
Query:    2 SPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQDPENKKVIICDEKLKKIFG 154
            S  ++ F+G+ E+PRTQ +K+IW +IK+H+LQ+P++++ I+CDEK++ IFG
Sbjct:  127 SAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFG 177
The following BLAST results are available for this feature:
BLAST of CK739982 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TRI1_YEAST7.691e-1149.02Protein TRI1 OS=Saccharomyces cerevisiae GN=TRI1 P... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6476 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739982 ID=CK739982; Name=CK739982; organism=Citrus sinensis; type=EST; length=519bp
CTCCCCTGAAATGGAAGCTTTTGTTGGCGCCCCTGAGATCCCTCGCACTC
AGGCTCTCAAGCTGATTTGGGCTCACATCAAGCAACACAATCTTCAGGAC
CCTGAGAACAAGAAGGTCATTATTTGCGATGAGAAACTGAAGAAGATTTT
TGGAGGAAGGGACAGGGTTGGGTTCCTTGAGATTGCAGGGTTGATTAGTC
CTCACTTCCTTTGAGAAACACTAGCAATTGGTTGATAGCTATGAACAATG
TTTTGACTGCAGAGATGGTATTTTGGTCGGTCATACTAGCGGAAAACGAA
TGTTGCTCTCTACAATTAGTAGCCTTTTTGTTTAATCTTCTTCTTATAAA
AGTACTGGCACGCAGAAGTATAACTTTTGAAGTCGTTGTGCTCCTGTTTT
CTGAAGATGTAGGTTCTGTAATGCAAATATTATTAGTAACTGCTGGTTCA
TGCTGTTCAACACCTCATATTTGGTAGAATGCAAATATTCAAGTTCTAGT
TCAAAAAAAAAAAAAAAAA
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