CK740039

Overview
NameCK740039
Unique NameCK740039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length423
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740039 vs. ExPASy Swiss-Prot
Match: COI1_ARATH (Coronatine-insensitive protein 1 OS=Arabidopsis thaliana GN=COI1 PE=1 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 1.573e-61
Identity = 115/139 (82.73%), Postives = 126/139 (90.65%), Query Frame = 2
Query:    2 KLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVRETDQGLI 418
            +LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC ELEY+A+YVSDITNESLE IG  L+NLCDFRLVLLDREE+I DLPLDNGVR+LL+GC KLRRF  YLRQGGLTD GL Y+GQYS NVRWMLLG V E+D+GL+
Sbjct:  343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM 481          
BLAST of CK740039 vs. ExPASy Swiss-Prot
Match: FBX14_ARATH (F-box protein FBX14 OS=Arabidopsis thaliana GN=FBX14 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.303e-12
Identity = 40/124 (32.26%), Postives = 66/124 (53.23%), Query Frame = 2
Query:   50 EDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDRE--EKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVRETDQGL 415
            ED EG VS  GL A+++GC +LE I  +  ++TN ++  +  N   L  FRL ++ R   + +   P+D+G  A++  C KL R  +    G LTD    Y+G+Y   +R + +     +D+ L
Sbjct:  399 EDSEGPVSGVGLQAISEGCRKLESILYFCQNMTNGAVTAMSENCPQLTVFRLCIMGRHRPDHVTGKPMDDGFGAIVKNCKKLTRLAV---SGLLTDEAFSYIGEYGKLIRTLSVAFAGNSDKAL 519          
BLAST of CK740039 vs. ExPASy Swiss-Prot
Match: TIR1L_ARATH (Transport inhibitor response 1-like protein OS=Arabidopsis thaliana GN=At5g49980 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.928e-12
Identity = 41/124 (33.06%), Postives = 65/124 (52.42%), Query Frame = 2
Query:   50 EDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDRE--EKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVRETDQGL 415
            ED EG VS+ GL A+++GC +LE I  +   +TN ++  +  N   L  FRL ++ R   + +   P+D G  A++  C KL R  +    G LTD    Y+G+Y   VR + +    ++D  L
Sbjct:  399 EDSEGPVSELGLQAISEGCRKLESILYFCQRMTNAAVIAMSENCPELTVFRLCIMGRHRPDHVTGKPMDEGFGAIVKNCKKLTRLAV---SGLLTDQAFRYMGEYGKLVRTLSVAFAGDSDMAL 519          
BLAST of CK740039 vs. ExPASy Swiss-Prot
Match: AFB3_ARATH (Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis thaliana GN=AFB3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.928e-12
Identity = 43/141 (30.50%), Postives = 73/141 (51.77%), Query Frame = 2
Query:    2 KLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLD--REEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVRETDQGLI 418
            +L+ LR+   +D  G ED    V++ GL+A++ GC +L  I  +   +TN +L  +  N  N   FRL +L+  + + I    LD G  A++  C  LRR  +    G LTD    Y+G Y+  +  + +    +TD+G++
Sbjct:  335 ELQELRVFP-SDVHGEEDNNASVTEVGLVAISAGCPKLHSILYFCKQMTNAALIAVAKNCPNFIRFRLCILEPHKPDHITFQSLDEGFGAIVQACKGLRRLSV---SGLLTDQVFLYIGMYAEQLEMLSIAFAGDTDKGML 471          
BLAST of CK740039 vs. ExPASy Swiss-Prot
Match: AFB2_ARATH (Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana GN=AFB2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.700e-12
Identity = 37/119 (31.09%), Postives = 63/119 (52.94%), Query Frame = 2
Query:   68 VSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLD--REEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVRETDQGLI 418
            V++ GL+A++ GC +L  I  +   +TN +L  +  N  N   FRL +L+  + + +   PLD G  A++  C  LRR  L    G LTD    Y+G Y+  +  + +    +TD+G++
Sbjct:  354 VTEEGLVAISAGCPKLHSILYFCQQMTNAALVTVAKNCPNFIRFRLCILEPNKPDHVTSQPLDEGFGAIVKACKSLRRLSL---SGLLTDQVFLYIGMYANQLEMLSIAFAGDTDKGML 469          
BLAST of CK740039 vs. ExPASy Swiss-Prot
Match: TIRC_ORYSJ (Transport inhibitor response 1-like protein Os11g0515500 OS=Oryza sativa subsp. japonica GN=Os11g0515500 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.672e-11
Identity = 37/118 (31.36%), Postives = 61/118 (51.69%), Query Frame = 2
Query:   68 VSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLD--REEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVRETDQGL 415
            V++ GL+A++ GC +L+ +  +   +TN +L  +  N      FRL +LD    + +   PLD G  A++  C  LRR  L    G LTDT   Y+G Y+  +  + +    +TD G+
Sbjct:  348 VTEEGLVAISAGCNKLQSVLYFCQRMTNSALITVAKNCPRFTSFRLCVLDPGSADAVTGQPLDEGYGAIVQSCKGLRRLCL---SGLLTDTVFLYIGMYAERLEMLSVAFAGDTDDGM 462          
The following BLAST results are available for this feature:
BLAST of CK740039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
COI1_ARATH1.573e-6182.73Coronatine-insensitive protein 1 OS=Arabidopsis th... [more]
FBX14_ARATH2.303e-1232.26F-box protein FBX14 OS=Arabidopsis thaliana GN=FBX... [more]
TIR1L_ARATH3.928e-1233.06Transport inhibitor response 1-like protein OS=Ara... [more]
AFB3_ARATH3.928e-1230.50Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis tha... [more]
AFB2_ARATH6.700e-1231.09Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis tha... [more]
TIRC_ORYSJ5.672e-1131.36Transport inhibitor response 1-like protein Os11g0... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6533 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740039 ID=CK740039; Name=CK740039; organism=Citrus sinensis; type=EST; length=423bp
GAAACTAAAAAGGCTTAGGATTGAGCGAGGGGCTGATGAGCAGGGAATGG
AGGATGAAGAAGGTCTTGTCTCGCAAAGAGGATTAATTGCTTTGGCTCAG
GGCTGCCTAGAGCTGGAGTACATCGCAATTTATGTATCAGATATTACAAA
TGAATCTCTGGAGTGTATTGGTGCCAACTTGAGAAACCTCTGTGATTTTC
GCCTAGTTTTGCTTGACCGAGAAGAGAAGATAGCAGACTTGCCGCTTGAC
AATGGAGTTCGAGCTCTGTTGATGGGATGTGATAAGCTAAGACGGTTTGG
TCTGTATCTCCGACAGGGTGGTTTGACAGATACAGGTCTAGGATATGTTG
GGCAGTACAGTCTGAATGTAAGATGGATGCTTTTGGGCTGCGTCCGTGAG
ACTGACCAGGGGCTTATAGCATT
back to top