CK740266
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK740266 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 4.470e-46 Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 3 Query: 78 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 296 +FDPL LADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA+PVNNNAWAYATNFVPGK Sbjct: 173 SFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245 HSP 2 Score: 57.7658 bits (138), Expect = 4.470e-46 Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 2 Query: 2 MGAVEGYRIAGGPLGEVTDPLYPGGS 79 MGAVEGYRIAGGPLGEVTDP+YPGGS Sbjct: 148 MGAVEGYRIAGGPLGEVTDPIYPGGS 173
BLAST of CK740266 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 9.885e-46 Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 3 Query: 78 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 296 +FDPLGLADD EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK Sbjct: 192 SFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264 HSP 2 Score: 57.3806 bits (137), Expect = 9.885e-46 Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 2 Query: 2 MGAVEGYRIAGGPLGEVTDPLYPGGSL*SIG 94 MGAVEGYR+AGGPLGEV DPLYPGGS +G Sbjct: 167 MGAVEGYRVAGGPLGEVVDPLYPGGSFDPLG 197
BLAST of CK740266 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 1.072e-44 Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = 3 Query: 78 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 296 +FDPLGLADDPEA AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT PGK Sbjct: 184 SFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATKLCPGK 256 HSP 2 Score: 58.9214 bits (141), Expect = 1.072e-44 Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 2 Query: 2 MGAVEGYRIAGGPLGEVTDPLYPGGSL*SIG 94 MGAVEGYRIAGGPLGEVTDP+YPGGS +G Sbjct: 159 MGAVEGYRIAGGPLGEVTDPIYPGGSFDPLG 189
BLAST of CK740266 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 2.372e-44 Identity = 67/73 (91.78%), Postives = 71/73 (97.26%), Query Frame = 3 Query: 78 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 296 +FDPLGLA+DPE AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK Sbjct: 192 SFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264 HSP 2 Score: 56.9954 bits (136), Expect = 2.372e-44 Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 2 Query: 2 MGAVEGYRIAGGPLGEVTDPLYPGGSL*SIG 94 MGAVEGYR+AGGPLGE+ DPLYPGGS +G Sbjct: 167 MGAVEGYRVAGGPLGEIVDPLYPGGSFDPLG 197
BLAST of CK740266 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 2.342e-41 Identity = 69/73 (94.52%), Postives = 70/73 (95.89%), Query Frame = 3 Query: 78 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 296 AFDPLGLADDPEA AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK Sbjct: 78 AFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150 HSP 2 Score: 46.595 bits (109), Expect = 2.342e-41 Identity = 19/31 (61.29%), Postives = 23/31 (74.19%), Query Frame = 2 Query: 2 MGAVEGYRIAGGPLGEVTDPLYPGGSL*SIG 94 MG +EGYR+ GGPLGE DPLYPG + +G Sbjct: 53 MGLIEGYRVGGGPLGEGLDPLYPGDAFDPLG 83
BLAST of CK740266 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.923e-40 Identity = 69/73 (94.52%), Postives = 70/73 (95.89%), Query Frame = 3 Query: 78 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 296 AFDPLGLADDPEA AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK Sbjct: 194 AFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266 HSP 2 Score: 43.1282 bits (100), Expect = 1.923e-40 Identity = 18/31 (58.06%), Postives = 22/31 (70.97%), Query Frame = 2 Query: 2 MGAVEGYRIAGGPLGEVTDPLYPGGSL*SIG 94 MG +EGYR+ GG LGE DPL PGG+ +G Sbjct: 169 MGLIEGYRVGGGTLGEGLDPLLPGGAFDPLG 199
BLAST of CK740266 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 1.963e-40 Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = 3 Query: 78 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 296 +FDPL DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK Sbjct: 52 SFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124 HSP 2 Score: 45.8246 bits (107), Expect = 1.963e-40 Identity = 22/27 (81.48%), Postives = 23/27 (85.19%), Query Frame = 2 Query: 2 MGAVEGYRIAG-GPLGEVTDPLYPGGS 79 MGAVEGYR+AG GPLGE D LYPGGS Sbjct: 26 MGAVEGYRVAGDGPLGEAEDLLYPGGS 52
BLAST of CK740266 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2) HSP 1 Score: 152.525 bits (384), Expect = 7.021e-37 Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 3 Query: 78 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 296 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK Sbjct: 193 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
BLAST of CK740266 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2) HSP 1 Score: 151.369 bits (381), Expect = 1.564e-36 Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 3 Query: 78 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 296 +FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK Sbjct: 189 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261
BLAST of CK740266 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 2.668e-36 Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 3 Query: 78 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 296 +FDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK Sbjct: 134 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206 The following BLAST results are available for this feature:
BLAST of CK740266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 72
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Sequences
The
following sequences are available for this feature:
EST sequence >CK740266 ID=CK740266; Name=CK740266; organism=Citrus sinensis; type=EST; length=444bpback to top |