CK932653

Overview
NameCK932653
Unique NameCK932653
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length434
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9815 contig Csv1_Contig9815:412..845. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK932653 vs. ExPASy Swiss-Prot
Match: RNH2A_ARATH (Ribonuclease H2 subunit A OS=Arabidopsis thaliana GN=At2g25100 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.146e-28
Identity = 59/92 (64.13%), Postives = 71/92 (77.17%), Query Frame = 3 
Query:    6 LTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDGDVSSRRSGKRQLKLSDIGFSSSKRRSEEIEPSGKGRCKFLEARKLEQLTHF 281
            L  HKH +FGFPSLVRFSWGTCT+H K  VEV WE+DE + +  +  S KRQ KLS  GF + ++RSEEIE SGKGRCKFL+ARK++QLT F
Sbjct:  206 LVQHKHSVFGFPSLVRFSWGTCTTHLKGEVEVAWEADENE-ESGNGSSSKRQAKLSSFGFKTCEKRSEEIESSGKGRCKFLQARKIQQLTQF 296
The following BLAST results are available for this feature:
BLAST of CK932653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RNH2A_ARATH1.146e-2864.13Ribonuclease H2 subunit A OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004531_C09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932653 ID=CK932653; Name=CK932653; organism=Citrus sinensis; type=EST; length=434bp
GGGGGTTGACAGATCACAAACACATTATATTTGGATTCCCGAGTTTGGTT
CGCTTCAGTTGGGGTACATGCACTTCTCATTTCAAAGACATTGTTGAAGT
CTTGTGGGAATCTGATGAAATGGATGGAGATGTTTCCAGTCGTAGAAGTG
GCAAGCGACAATTGAAATTAAGTGATATTGGCTTCAGCTCATCTAAAAGG
AGAAGTGAAGAAATTGAACCAAGTGGTAAAGGGCGCTGCAAGTTTCTTGA
GGCACGTAAACTTGAGCAACTCACTCATTTCTGAATGAAACCCTTGCTTT
TCACGGGTTGTTTATTTTTCTTGTATTGAACCAATGAATGATCAGATCAT
GCATTCACATGTACCCTAAATCAAGCAGCGTAATTTTACTGAATGTCATT
TCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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