CK932836

Overview
NameCK932836
Unique NameCK932836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1490 contig Csv1_Contig1490:1..613. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL37A_GOSHI (60S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.650e-46
Identity = 90/92 (97.83%), Postives = 90/92 (97.83%), Query Frame = 1
Query:   88 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSIIRRLREQTES 363
            MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCK CGKVKAGGAYTLNTASAVTVRS IRRLREQTES
Sbjct:    1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKACGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL37A_ORYSJ (60S ribosomal protein L37a OS=Oryza sativa subsp. japonica GN=Os01g0679700 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.767e-46
Identity = 88/92 (95.65%), Postives = 91/92 (98.91%), Query Frame = 1
Query:   88 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSIIRRLREQTES 363
            MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK+AVKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRS IRRLREQTE+
Sbjct:    1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL37A_PSEMZ (60S ribosomal protein L37a OS=Pseudotsuga menziesii GN=RPL37A PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.035e-45
Identity = 87/91 (95.60%), Postives = 89/91 (97.80%), Query Frame = 1
Query:   88 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSIIRRLREQTE 360
            MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSK+FCEFCGK+AVKRKAVGIWGCKDCGKVKAGGAYTLNT SAVTVRS IRRLREQTE
Sbjct:    1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTLNTPSAVTVRSTIRRLREQTE 91          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: R37A1_ARATH (Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana GN=RPL37AB PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 8.990e-45
Identity = 86/92 (93.48%), Postives = 89/92 (96.74%), Query Frame = 1
Query:   88 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSIIRRLREQTES 363
            MTKRTKKA IVGKYGTRYGASLRKQIKKMEVSQH+KYFCEFCGKY+VKRK VGIWGCKDCGKVKAGGAYT+NTASAVTVRS IRRLREQTES
Sbjct:    1 MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: R37A2_ARATH (60S ribosomal protein L37a-2 OS=Arabidopsis thaliana GN=RPL37AC PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 5.827e-44
Identity = 84/91 (92.31%), Postives = 86/91 (94.51%), Query Frame = 1
Query:   88 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSIIRRLREQTE 360
            M KRTKK GIVGKYGTRYGAS+RKQIKKMEVSQHSKYFCEFCGKY VKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRS IRRLREQ E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQIE 91          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL37A_BRARA (60S ribosomal protein L37a OS=Brassica rapa GN=RPL37A PE=3 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 1.435e-42
Identity = 84/92 (91.30%), Postives = 86/92 (93.48%), Query Frame = 1
Query:   88 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRS-IIRRLREQTE 360
            M KRTKK GIVGKYGTRYGAS+RKQIKKMEVSQHSKYFCEFCGKY VKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRS  IRRLREQ E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSHTIRRLREQIE 92          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL37A_OSTLU (60S ribosomal protein L37a OS=Ostreococcus lucimarinus (strain CCE9901) GN=RPL37a PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.371e-37
Identity = 72/91 (79.12%), Postives = 78/91 (85.71%), Query Frame = 1
Query:   88 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSIIRRLREQTE 360
            M KRTKK GIVGKYGTRYGASLRK +KK EVSQHSK+FC+FCGKY +KRKAVGIW CK C K KAGGAY+LNT  +VTVRS IRRLRE TE
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKVVKKQEVSQHSKFFCDFCGKYGMKRKAVGIWSCKGCNKTKAGGAYSLNTGGSVTVRSTIRRLREATE 91          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL37A_OSTTA (60S ribosomal protein L37a OS=Ostreococcus tauri GN=RPL37a PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.007e-36
Identity = 71/91 (78.02%), Postives = 78/91 (85.71%), Query Frame = 1
Query:   88 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSIIRRLREQTE 360
            M KRTKK GIVGKYGTRYGASLRK +KK EVSQHSK+FC+FCGKY +KR+AVGIW CK C K KAGGAY+LNT  +VTVRS IRRLRE TE
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKVVKKTEVSQHSKFFCDFCGKYGMKRQAVGIWCCKGCNKTKAGGAYSLNTGGSVTVRSTIRRLREATE 91          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL37A_CRYST (60S ribosomal protein L37a OS=Cryptochiton stelleri GN=RPL37A PE=3 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 1.879e-34
Identity = 68/92 (73.91%), Postives = 78/92 (84.78%), Query Frame = 1
Query:   88 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSIIRRLREQTES 363
            M KRTKK GIVGKYGTRYGASLRK +KKME++QHSKY C+FCGK A+KR+AVGIWGCK C KV AGGA+  +T +AVTVRS +RRLRE  ES
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKTVKKMEITQHSKYTCQFCGKDAMKRQAVGIWGCKSCRKVVAGGAWVYSTMAAVTVRSAVRRLREMKES 92          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL37A_CHICK (60S ribosomal protein L37a OS=Gallus gallus GN=RPL37A PE=3 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.140e-31
Identity = 64/88 (72.73%), Postives = 72/88 (81.82%), Query Frame = 1
Query:   88 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSIIRRLRE 351
            M KRTKK GIVGKYGTRYGASLRK +KK+E+SQH+KY C FCGK  +KRKAVGIW C  C K  AGGA+T NT SAVTV+S IRRL+E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88          
The following BLAST results are available for this feature:
BLAST of CK932836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RL37A_GOSHI3.650e-4697.8360S ribosomal protein L37a OS=Gossypium hirsutum G... [more]
RL37A_ORYSJ4.767e-4695.6560S ribosomal protein L37a OS=Oryza sativa subsp. ... [more]
RL37A_PSEMZ4.035e-4595.6060S ribosomal protein L37a OS=Pseudotsuga menziesi... [more]
R37A1_ARATH8.990e-4593.48Putative 60S ribosomal protein L37a-1 OS=Arabidops... [more]
R37A2_ARATH5.827e-4492.3160S ribosomal protein L37a-2 OS=Arabidopsis thalia... [more]
RL37A_BRARA1.435e-4291.3060S ribosomal protein L37a OS=Brassica rapa GN=RPL... [more]
RL37A_OSTLU2.371e-3779.1260S ribosomal protein L37a OS=Ostreococcus lucimar... [more]
RL37A_OSTTA2.007e-3678.0260S ribosomal protein L37a OS=Ostreococcus tauri G... [more]
RL37A_CRYST1.879e-3473.9160S ribosomal protein L37a OS=Cryptochiton steller... [more]
RL37A_CHICK1.140e-3172.7360S ribosomal protein L37a OS=Gallus gallus GN=RPL... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004350_H04 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IVF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932836 ID=CK932836; Name=CK932836; organism=Citrus sinensis; type=EST; length=613bp
GGGGGGGGTTAGGGTTTCTTTTGTCGCTCTACGTCTCAAACAGCCGCTGC
TTGTTGAAGAGCTACAGACCTTCGCTCCAACGCCACAATGACCAAACGTA
CGAAGAAGGCCGGAATCGTTGGAAAGTATGGTACCCGTTATGGTGCCAGT
TTGAGGAAGCAAATTAAGAAGATGGAGGTTAGTCAGCATAGCAAATATTT
CTGCGAATTTTGCGGGAAGTATGCGGTGAAGAGGAAAGCTGTTGGCATTT
GGGGCTGCAAGGACTGTGGGAAAGTCAAGGCAGGCGGTGCCTACACTTTG
AACACTGCTAGTGCTGTGACTGTGAGGAGCATAATCCGTAGGTTGAGGGA
GCAAACTGAAAGCTGAGCTTTGCCACCATTGGCTTCCTCCCGTGTCTTAG
GTGGTTTGATCTTTAGTTTCGGATACAACCTTAAATCATTTTTGATGTTG
CTTTATTTACCAATTTCATGTTTCTAGATGCAAAACAATTGGTTGTTGGA
ACATGAAACTTTTGGCTGTGTTTTGACTCTTGAGATGTTCATTCGCTATT
TTTCCTATGAAATTATGTTATCTAGTGGGTTGATGAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
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