CK933135
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK933135 vs. ExPASy Swiss-Prot
Match: SBDS_BOVIN (Ribosome maturation protein SBDS OS=Bos taurus GN=SBDS PE=2 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 9.604e-64 Identity = 75/166 (45.18%), Postives = 110/166 (66.27%), Query Frame = 2 Query: 314 QICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKRQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWDASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNL---QGRLEILAVSVHAEGD 802 +IC +IL KGE+QV+ KER TQ FRDIATIV K VN ET+RPYT+ +IER M +IH++V PN S+K+QALEVI++L++ I+R+ MR+ +P L EKL ++ ++ G QL ++C ++PG FR+ D L++ +G LE+L++ EGD Sbjct: 82 EICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKPL-IKVIESEDYGQQLEIVCLIDPGCFREVDELIKKETKGKGSLEVLSLKDVEEGD 246 HSP 2 Score: 119.013 bits (297), Expect = 9.604e-64 Identity = 57/82 (69.51%), Postives = 69/82 (84.15%), Query Frame = 1 Query: 76 TLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDLIAAFGTDDQTNM 321 ++ P Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRS VEKDLDEVLQ+H+V+ NVSKG +AK +DLI+AFGTDDQT + Sbjct: 2 SIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSKGQVAKKEDLISAFGTDDQTEI 83
BLAST of CK933135 vs. ExPASy Swiss-Prot
Match: SBDS_RAT (Ribosome maturation protein SBDS OS=Rattus norvegicus GN=Sbds PE=2 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 2.776e-63 Identity = 77/166 (46.39%), Postives = 110/166 (66.27%), Query Frame = 2 Query: 314 QICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKRQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWDASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNL---QGRLEILAVSVHAEGD 802 +IC +IL KGE+QV+ KER TQ FRDIATIV K VN ET+RPYT+ +IER M +IH++V PN S+K+QALEVI++L++ I+R+ MR+ +P L EKL + S+D S QL ++C ++PG FR+ D L++ +G LE+L++ EGD Sbjct: 82 EICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFLLPVNEGKKLKEKLKPLMKVVESEDYS-QQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLSLKDVEEGD 246 HSP 2 Score: 119.013 bits (297), Expect = 2.776e-63 Identity = 57/82 (69.51%), Postives = 69/82 (84.15%), Query Frame = 1 Query: 76 TLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDLIAAFGTDDQTNM 321 ++ P Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRS VEKDLDEVLQ+H+V+ NVSKG +AK +DLI+AFGTDDQT + Sbjct: 2 SIFTPTNQIRLTNVAVVRMKRGGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSKGQVAKKEDLISAFGTDDQTEI 83
BLAST of CK933135 vs. ExPASy Swiss-Prot
Match: SBDS_MOUSE (Ribosome maturation protein SBDS OS=Mus musculus GN=Sbds PE=2 SV=4) HSP 1 Score: 144.05 bits (362), Expect = 2.776e-63 Identity = 77/166 (46.39%), Postives = 110/166 (66.27%), Query Frame = 2 Query: 314 QICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKRQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWDASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNL---QGRLEILAVSVHAEGD 802 +IC +IL KGE+QV+ KER TQ FRDIATIV K VN ET+RPYT+ +IER M +IH++V PN S+K+QALEVI++L++ I+R+ MR+ +P L EKL + S+D S QL ++C ++PG FR+ D L++ +G LE+L++ EGD Sbjct: 82 EICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKPLMKVVESEDYS-QQLEIVCLIDPGCFREIDELIKKETKGRGSLEVLSLKDVEEGD 246 HSP 2 Score: 119.013 bits (297), Expect = 2.776e-63 Identity = 57/82 (69.51%), Postives = 69/82 (84.15%), Query Frame = 1 Query: 76 TLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDLIAAFGTDDQTNM 321 ++ P Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRS VEKDLDEVLQ+H+V+ NVSKG +AK +DLI+AFGTDDQT + Sbjct: 2 SIFTPTNQIRLTNVAVVRMKRGGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSKGQVAKKEDLISAFGTDDQTEI 83
BLAST of CK933135 vs. ExPASy Swiss-Prot
Match: SBDS_PONAB (Ribosome maturation protein SBDS OS=Pongo abelii GN=SBDS PE=2 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 1.779e-62 Identity = 74/166 (44.58%), Postives = 108/166 (65.06%), Query Frame = 2 Query: 314 QICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKRQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWDASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNL---QGRLEILAVSVHAEGD 802 +IC +IL KGE+QV+ KER TQ FRDIATIV K VN ET+RPYT+ +IER M +IH++V N S+K+QALEVI++L++ I+R+ MR+ +P L EKL ++ ++ G QL ++C ++PG FR+ D L++ +G LE+L + EGD Sbjct: 82 EICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKPL-IKVIESEDYGQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNLKDVEEGD 246 HSP 2 Score: 119.013 bits (297), Expect = 1.779e-62 Identity = 57/82 (69.51%), Postives = 69/82 (84.15%), Query Frame = 1 Query: 76 TLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDLIAAFGTDDQTNM 321 ++ P Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRS VEKDLDEVLQ+H+V+ NVSKG +AK +DLI+AFGTDDQT + Sbjct: 2 SIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSKGQVAKKEDLISAFGTDDQTEI 83
BLAST of CK933135 vs. ExPASy Swiss-Prot
Match: SBDS_HUMAN (Ribosome maturation protein SBDS OS=Homo sapiens GN=SBDS PE=1 SV=4) HSP 1 Score: 141.354 bits (355), Expect = 1.779e-62 Identity = 74/166 (44.58%), Postives = 108/166 (65.06%), Query Frame = 2 Query: 314 QICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKRQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWDASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNL---QGRLEILAVSVHAEGD 802 +IC +IL KGE+QV+ KER TQ FRDIATIV K VN ET+RPYT+ +IER M +IH++V N S+K+QALEVI++L++ I+R+ MR+ +P L EKL ++ ++ G QL ++C ++PG FR+ D L++ +G LE+L + EGD Sbjct: 82 EICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKPL-IKVIESEDYGQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNLKDVEEGD 246 HSP 2 Score: 119.013 bits (297), Expect = 1.779e-62 Identity = 57/82 (69.51%), Postives = 69/82 (84.15%), Query Frame = 1 Query: 76 TLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDLIAAFGTDDQTNM 321 ++ P Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRS VEKDLDEVLQ+H+V+ NVSKG +AK +DLI+AFGTDDQT + Sbjct: 2 SIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSKGQVAKKEDLISAFGTDDQTEI 83
BLAST of CK933135 vs. ExPASy Swiss-Prot
Match: SBDS_CHICK (Ribosome maturation protein SBDS OS=Gallus gallus GN=SBDS PE=2 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 2.320e-62 Identity = 77/166 (46.39%), Postives = 111/166 (66.87%), Query Frame = 2 Query: 314 QICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKRQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWDASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNL---QGRLEILAVSVHAEGD 802 +IC IL KGELQV+ KER+TQ FRDIATIV K VN ET+RPYT+ +IER M +IH++V PN S+K+QALEVIR+L++ I+R+ MR+ +P + L EKL ++ ++ QL ++C ++PG FR+ D L+R+ +G LE+L++ EGD Sbjct: 82 EICKVILSKGELQVSDKERQTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIRQLKETMQIERAHMRLRFILPVKEGKKLKEKLKPL-IKVIENEDFHDQLEIVCLIDPGCFREIDELIRSETKGKGTLEVLSLKDVEEGD 246 HSP 2 Score: 114.005 bits (284), Expect = 2.320e-62 Identity = 53/82 (64.63%), Postives = 66/82 (80.49%), Query Frame = 1 Query: 76 TLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDLIAAFGTDDQTNM 321 ++ P Q RLTNVAVVR ++ G RFEIACY+NKV+ WRS EKD+DEVLQ+HTV+ NVSKG +AK +DL+ AFGTDDQT + Sbjct: 2 SIFTPTNQIRLTNVAVVRARRAGKRFEIACYRNKVMGWRSGAEKDIDEVLQTHTVFVNVSKGQVAKKEDLVRAFGTDDQTEI 83
BLAST of CK933135 vs. ExPASy Swiss-Prot
Match: SBDS_XENLA (Ribosome maturation protein SBDS OS=Xenopus laevis GN=sbds PE=2 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 9.926e-33 Identity = 76/166 (45.78%), Postives = 110/166 (66.27%), Query Frame = 2 Query: 314 QICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKRQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWDASIVSKDNSGSQLSLICEMEPGLFRDCDTLLR---NLQGRLEILAVSVHAEGD 802 +IC +IL KGELQV+ KER TQ FRDIATIV K VN ET+RPYT+++IER M +IH++V S+K+QAL+VI++L++ I+R+ MR+ VP ++ L EKL I S +N +L ++C ++PG FR+ D L+R +G LE+L++ EGD Sbjct: 82 EICKQILSKGELQVSEKERSTQLEQMFRDIATIVADKCVNPETKRPYTVNLIERAMKDIHYSVKATKSTKQQALDVIKQLKETMQIERAHMRLRFIVPAKDGKKLKEKLKPLIKHIES-ENFDQELEIVCLIDPGCFREIDELIRCETKGKGTLEVLSLKDVEEGD 246 HSP 2 Score: 117.087 bits (292), Expect = 1.175e-25 Identity = 60/103 (58.25%), Postives = 74/103 (71.84%), Query Frame = 1 Query: 76 TLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDLIAAFGTDDQTNMFGDFGERGASSCWKGEGNTVL 384 ++ P Q RLTNVAVVR+KK G RFEIACYKNKV+SWRS EKDLDEVLQ+H+V+ NVSKG AK +DL+ AFGT+DQT + +G + E +T L Sbjct: 2 SIFTPTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAEKDLDEVLQTHSVFMNVSKGQGAKKEDLLKAFGTEDQTEICKQILSKGELQVSEKERSTQL 104
BLAST of CK933135 vs. ExPASy Swiss-Prot
Match: SBDS_DICDI (Ribosome maturation protein SBDS OS=Dictyostelium discoideum GN=sbds PE=3 SV=2) HSP 1 Score: 140.584 bits (353), Expect = 9.926e-33 Identity = 71/169 (42.01%), Postives = 115/169 (68.05%), Query Frame = 2 Query: 311 KQICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKRQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSL-MEKLDAWDASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNL---QGRLEILAVSVHAEGDT 805 ++I L ILEKGELQV+ KER+ Q F+DIATIV +K VN+ETQRP +S+IE+ M ++H+++ P SSK+Q+LEVI+++ PI+R+ MR+ +T+P + +L +KL + I +D G LS++C ++PG +R D L++ +G ++I+ ++V EG+T Sbjct: 81 QEIILLILEKGELQVSSKERDNQSEQTFKDIATIVAEKCVNTETQRPIPVSIIEKAMKDVHYSIHPTKSSKQQSLEVIKQISSVIPIQRAQMRLNITIPTKESKTLNRDKLMVLVSKIEEEDRDGGGLSIVCLVDPGSYRKIDELIKQETKGKGFIDIINLAVAKEGET 249 HSP 2 Score: 98.5969 bits (244), Expect = 4.326e-20 Identity = 47/90 (52.22%), Postives = 66/90 (73.33%), Query Frame = 1 Query: 76 TLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDLIAAFGTDDQTNMFGDFGERG 345 ++ PV K LTN+ VVR KK +FEIACY +KV S+RS++EKDL+EV+Q H +++NVSKGI+AK +LI AFGTD++ + E+G Sbjct: 2 SIFTPVNNKTLTNIVVVRYKKGAAKFEIACYPSKVQSYRSKIEKDLNEVIQIHRIFTNVSKGIIAKKDELIKAFGTDNEQEIILLILEKG 91
BLAST of CK933135 vs. ExPASy Swiss-Prot
Match: SBDS_XENTR (Ribosome maturation protein SBDS OS=Xenopus tropicalis GN=sbds PE=2 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 8.403e-32 Identity = 73/166 (43.98%), Postives = 108/166 (65.06%), Query Frame = 2 Query: 314 QICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKRQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWDASIVSKDNSGSQLSLICEMEPGLFRDCDTLLR---NLQGRLEILAVSVHAEGD 802 +IC +IL KGELQV+ KER TQ FRDIATIV K VN ET+RPYT+++IER M +IH++V S+K+QAL+VI++L++ I+R+ MR+ +P ++ L EKL +N +L ++C ++PG FR+ D L+R +G LE+L++ EGD Sbjct: 82 EICKQILSKGELQVSEKERSTQLEQMFRDIATIVADKCVNPETKRPYTVNLIERAMKDIHYSVKATKSTKQQALDVIKQLKETMQIERAHMRLRFILPAKDGKKLKEKLKPL-IKHTESENFDQELEIVCLIDPGCFREIDELIRCETKGKGTLEVLSLKDVEEGD 246 HSP 2 Score: 115.546 bits (288), Expect = 3.419e-25 Identity = 58/103 (56.31%), Postives = 74/103 (71.84%), Query Frame = 1 Query: 76 TLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDLIAAFGTDDQTNMFGDFGERGASSCWKGEGNTVL 384 ++ P Q RLTNVAVVR+KK G RFEIACYKNKV+SWRS EKDLDEVLQ+H+V+ NVSKG +AK +DL+ +FGT+D T + +G + E +T L Sbjct: 2 SIFTPTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAEKDLDEVLQTHSVFMNVSKGQVAKKEDLLKSFGTEDPTEICKQILSKGELQVSEKERSTQL 104
BLAST of CK933135 vs. ExPASy Swiss-Prot
Match: SBDS_CAEEL (Ribosome maturation protein SBDS OS=Caenorhabditis elegans GN=sbds-1 PE=2 SV=2) HSP 1 Score: 119.398 bits (298), Expect = 2.368e-26 Identity = 57/82 (69.51%), Postives = 70/82 (85.37%), Query Frame = 1 Query: 67 MSKTLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDLIAAFGTDDQ 312 MSK + P QK LTNVAVVR+KK G RFEIACYKNKV++WR++ EKD+DEVLQ+HTV+SNVSKG L+K ++LIAAFG +DQ Sbjct: 1 MSKNIKTPTNQKVLTNVAVVRMKKTGKRFEIACYKNKVVNWRNKSEKDIDEVLQTHTVFSNVSKGQLSKKEELIAAFGIEDQ 82 HSP 2 Score: 113.62 bits (283), Expect = 1.299e-24 Identity = 62/195 (31.79%), Postives = 112/195 (57.44%), Query Frame = 2 Query: 227 SRTLFIRMCQKEFSRSQRI*LQHLVLMIKQICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKRQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWDASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNL---QGRLEILAVSVHAEGD 802 + T+F + + + S+ + + + +IC IL+KG+LQV+ KER+ ++++ ++ VN ET+RP S+I++ + E+HF++ PN SSK+QAL+ I +L++ I+R+ M++ + +P + S+ KL + + D L ++ +EPG FR D L+RN GRLEIL++ EG+ Sbjct: 55 THTVFSNVSKGQLSKKEELIAAFGIEDQLEICKIILDKGDLQVSEKERQAASDQSLKEVSQLIASMVVNPETKRPVPPSVIDKALQEMHFSLKPNRSSKQQALDAIPKLRETLKIERAKMKIRVAIPTKEAKSVHTKLKTLFSDVEVDDWQDGSLEMVGLIEPGSFRALDDLVRNETKGHGRLEILSLKDVVEGE 249 The following BLAST results are available for this feature:
BLAST of CK933135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK933135 ID=CK933135; Name=CK933135; organism=Citrus sinensis; type=EST; length=806bpback to top |