CK935225

Overview
NameCK935225
Unique NameCK935225
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935225 vs. ExPASy Swiss-Prot
Match: MSI1_SOLLC (WD-40 repeat-containing protein MSI1 OS=Solanum lycopersicum GN=MSI1 PE=2 SV=1)

HSP 1 Score: 368.622 bits (945), Expect = 2.388e-101
Identity = 173/190 (91.05%), Postives = 179/190 (94.21%), Query Frame = 1
Query:  265 MGKDXXXXXXXXXXRLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK 834
            MGKD          RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEP GKDYSVQKMILGTHTSENEPNYLMLAQVQLPL+D+ENDARHYDDDRS+FGGFGCANGKVQIIQQINHDGEVNRARYMPQNPF+IATKTVSAEVYVFDYSKHPSKPPLDGAC+PDLRLRGHSTEGYGLSWS+FK
Sbjct:    1 MGKDEDEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPSGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLEDAENDARHYDDDRSEFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRLRGHSTEGYGLSWSQFK 190          
BLAST of CK935225 vs. ExPASy Swiss-Prot
Match: MSI1_ARATH (WD-40 repeat-containing protein MSI1 OS=Arabidopsis thaliana GN=MSI1 PE=1 SV=1)

HSP 1 Score: 357.066 bits (915), Expect = 7.189e-98
Identity = 167/190 (87.89%), Postives = 177/190 (93.16%), Query Frame = 1
Query:  265 MGKDXXXXXXXXXXRLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK 834
            MGKD          RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEP GKDYSVQKMILGTHTSE+EPNYLMLAQVQLPLDD+E++AR YDDDRS+FGGFGCA GKVQIIQQINHDGEVNRARYMPQNPF+IATKTV+AEVYVFDYSKHPSKPPLDGAC+PDL+LRGHS+EGYGLSWSKFK
Sbjct:    1 MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPSGKDYSVQKMILGTHTSESEPNYLMLAQVQLPLDDTESEARQYDDDRSEFGGFGCATGKVQIIQQINHDGEVNRARYMPQNPFIIATKTVNAEVYVFDYSKHPSKPPLDGACNPDLKLRGHSSEGYGLSWSKFK 190          
BLAST of CK935225 vs. ExPASy Swiss-Prot
Match: RBBP4_XENTR (Histone-binding protein RBBP4 OS=Xenopus tropicalis GN=rbbp4 PE=2 SV=3)

HSP 1 Score: 263.848 bits (673), Expect = 8.282e-70
Identity = 118/173 (68.21%), Postives = 146/173 (84.39%), Query Frame = 1
Query:  307 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWS 825
            R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD+S+ +++LGTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+
Sbjct:   15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPDGKDFSIHRLVLGTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWN 186          
BLAST of CK935225 vs. ExPASy Swiss-Prot
Match: RBBP4_MOUSE (Histone-binding protein RBBP4 OS=Mus musculus GN=Rbbp4 PE=1 SV=4)

HSP 1 Score: 263.848 bits (673), Expect = 8.282e-70
Identity = 118/173 (68.21%), Postives = 146/173 (84.39%), Query Frame = 1
Query:  307 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWS 825
            R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD+S+ +++LGTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+
Sbjct:   15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWN 186          
BLAST of CK935225 vs. ExPASy Swiss-Prot
Match: RBBP4_HUMAN (Histone-binding protein RBBP4 OS=Homo sapiens GN=RBBP4 PE=1 SV=3)

HSP 1 Score: 263.848 bits (673), Expect = 8.282e-70
Identity = 118/173 (68.21%), Postives = 146/173 (84.39%), Query Frame = 1
Query:  307 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWS 825
            R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD+S+ +++LGTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+
Sbjct:   15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWN 186          
BLAST of CK935225 vs. ExPASy Swiss-Prot
Match: RBBP4_CHICK (Histone-binding protein RBBP4 OS=Gallus gallus GN=RBBP4 PE=1 SV=3)

HSP 1 Score: 263.848 bits (673), Expect = 8.282e-70
Identity = 118/173 (68.21%), Postives = 146/173 (84.39%), Query Frame = 1
Query:  307 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWS 825
            R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD+S+ +++LGTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+
Sbjct:   15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWN 186          
BLAST of CK935225 vs. ExPASy Swiss-Prot
Match: RBBP4_BOVIN (Histone-binding protein RBBP4 OS=Bos taurus GN=RBBP4 PE=1 SV=3)

HSP 1 Score: 263.848 bits (673), Expect = 8.282e-70
Identity = 118/173 (68.21%), Postives = 146/173 (84.39%), Query Frame = 1
Query:  307 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWS 825
            R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD+S+ +++LGTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+
Sbjct:   15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWN 186          
BLAST of CK935225 vs. ExPASy Swiss-Prot
Match: RBP4B_XENLA (Histone-binding protein RBBP4-B OS=Xenopus laevis GN=rbbp4-B PE=1 SV=3)

HSP 1 Score: 263.462 bits (672), Expect = 1.082e-69
Identity = 118/173 (68.21%), Postives = 145/173 (83.82%), Query Frame = 1
Query:  307 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWS 825
            R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD+S+ +++LGTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYMPQNP +IATKT S +V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+
Sbjct:   15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPDGKDFSIHRLVLGTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSCDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWN 186          
BLAST of CK935225 vs. ExPASy Swiss-Prot
Match: RBBP4_DANRE (Histone-binding protein RBBP4 OS=Danio rerio GN=rbbp4 PE=2 SV=3)

HSP 1 Score: 263.077 bits (671), Expect = 1.413e-69
Identity = 118/173 (68.21%), Postives = 146/173 (84.39%), Query Frame = 1
Query:  307 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWS 825
            R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD+SV +++LGTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYMPQNP +IATKT +++V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+
Sbjct:   15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSVHRLVLGTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPTSDVLVFDYTKHPSKPDPSGECTPDLRLRGHQKEGYGLSWN 186          
BLAST of CK935225 vs. ExPASy Swiss-Prot
Match: RBBP7_XENTR (Histone-binding protein RBBP7 OS=Xenopus tropicalis GN=rbbp7 PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.410e-69
Identity = 119/173 (68.79%), Postives = 146/173 (84.39%), Query Frame = 1
Query:  307 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWS 825
            R+INEEYKIWKKNTPFLYDLV+THALEWPSLTV+WLPD   P GKDY++  ++LGTHTS+ E N+L++A+VQ+P DD++ DA HYD ++ +FGGFG  +GK++   +INH+GEVNRARYMPQNP +IATKT SA+V VFDY+KHPSKP   G CSPDLRLRGH  EGYGLSW+
Sbjct:   14 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVTRPEGKDYALHWLVLGTHTSD-EQNHLVVARVQIPNDDAQFDASHYDSEKGEFGGFGSVSGKIETEIKINHEGEVNRARYMPQNPCIIATKTPSADVLVFDYTKHPSKPDPSGDCSPDLRLRGHQKEGYGLSWN 185          
The following BLAST results are available for this feature:
BLAST of CK935225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
MSI1_SOLLC2.388e-10191.05WD-40 repeat-containing protein MSI1 OS=Solanum ly... [more]
MSI1_ARATH7.189e-9887.89WD-40 repeat-containing protein MSI1 OS=Arabidopsi... [more]
RBBP4_XENTR8.282e-7068.21Histone-binding protein RBBP4 OS=Xenopus tropicali... [more]
RBBP4_MOUSE8.282e-7068.21Histone-binding protein RBBP4 OS=Mus musculus GN=R... [more]
RBBP4_HUMAN8.282e-7068.21Histone-binding protein RBBP4 OS=Homo sapiens GN=R... [more]
RBBP4_CHICK8.282e-7068.21Histone-binding protein RBBP4 OS=Gallus gallus GN=... [more]
RBBP4_BOVIN8.282e-7068.21Histone-binding protein RBBP4 OS=Bos taurus GN=RBB... [more]
RBP4B_XENLA1.082e-6968.21Histone-binding protein RBBP4-B OS=Xenopus laevis ... [more]
RBBP4_DANRE1.413e-6968.21Histone-binding protein RBBP4 OS=Danio rerio GN=rb... [more]
RBBP7_XENTR2.410e-6968.79Histone-binding protein RBBP7 OS=Xenopus tropicali... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004564_C09 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIIF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935225 ID=CK935225; Name=CK935225; organism=Citrus sinensis; type=EST; length=835bp
GGGGAAATCTCAGATTCCGCCGCTCTCGCTTCATTTGTCGTTTTTTGGGT
TCTATTTCGTCGAGAGAAAGGGAGCAATAGGTTCATCTGCTGAGATAGAG
TTTTTGGCGCCGTTTCCTCCTCCGCTCGCCAGTTCCATTTTAATAATAAT
TTACCGTTAGGGGAAGCAAATAATTGTAAAAGCAGATGAATGGAGTTGCA
TCTACCTCAGTTGCAGAAGTAGGACTTTGGCGGCAACAAAACTTAAGAAA
TTGAGCGAAGAGCAATGGGAAAAGACGAGGAAGAGATGAGGGGAGAGATA
GAAGAGAGGTTGATAAATGAAGAATACAAGATTTGGAAGAAGAACACTCC
GTTTCTGTATGATCTTGTCATCACACATGCCCTTGAATGGCCTTCTCTGA
CTGTTGAGTGGTTGCCTGATAGAGAAGAACCCCCTGGCAAAGACTATTCT
GTTCAGAAAATGATCCTTGGGACACACACATCTGAGAATGAGCCCAACTA
TCTCATGCTTGCTCAGGTCCAGCTTCCTCTTGATGACTCAGAGAATGATG
CCCGCCATTACGATGATGACCGCTCTGATTTTGGTGGCTTTGGCTGTGCC
AATGGCAAGGTGCAAATAATTCAGCAAATAAACCATGATGGAGAGGTTAA
CCGGGCCCGTTATATGCCTCAGAATCCGTTTCTTATTGCCACGAAGACTG
TTAGTGCTGAGGTCTATGTTTTTGATTATAGCAAACACCCTTCTAAACCT
CCTCTGGATGGTGCATGTAGTCCTGATCTGAGGCTGAGGGGCCATAGCAC
TGAAGGATACGGCTTATCGTGGAGCAAGTTCAAGG
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