CK935804
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK935804 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 5.983e-15 Identity = 55/204 (26.96%), Postives = 93/204 (45.59%), Query Frame = 1 Query: 148 VAPRRNHSRPSLSYRPMMVTVAMST-------------PNKNKSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAPALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS 720 + P+ N RP + P+ V+ +T P K Y T + L +A MR+ + A + P LC+AACELVGG++E S IH++LP D L + KPT + + + +L D++L F E + +S AG RI+ + E+ +++G++G+V GQ +++C+ Sbjct: 40 INPKLNKKRP---FSPLTVSAIATTKEDERIEAAQTEEPFNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGGKRVRPMLCLAACELVGGNQENAMAAACAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHKIYGEDVAVLAGDSLLAFAFEHIVNS--TAGVTPSRIVGAVAELAKSIGTEGLVAGQVADIKCT 237
BLAST of CK935804 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.741e-14 Identity = 64/237 (27.00%), Postives = 103/237 (43.46%), Query Frame = 1 Query: 67 VNFFLSICLLKSAPMAKALSVLNLPAHVAPRRNHSRPSLSYRPMMVTVAMSTPNKNKSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAPALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVEMTY 777 ++FFLS + K LS+ + + + S S V + S+ K+Y + L A MR+ + A + P LC+AACEL GG S +H++LP D L + KPT + F + +L DA+L F E +A++ G +S RI+RV+ E+ + +GS+G+V GQ ++ CS+ GI DV + + Sbjct: 15 ISFFLSGTIRKPIFSCSRLSI----SAIITKEQTQEESESKSKKEVAFSSSSSFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGGKRVRPMLCIAACELFGGTESVAMPSACAVEMIHTMSLMHDDLPCMDNDDL-RRGKPTNHKVFGEDVAVLAGDALLAFAFEHIATATK--GVSSERIVRVVGELAKCIGSEGLVAGQVVDV-CSE---------GIADVGLEH 234
BLAST of CK935804 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 2.274e-14 Identity = 45/138 (32.61%), Postives = 71/138 (51.45%), Query Frame = 1 Query: 325 MRHFVFAAPVNMAPALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDD 738 MR+ + A + P LC+AACELVGG S IH++LP D L + KPT + F + +L DA+L F E LAS+ + + R++R + E+ +A+G++G+V GQ ++ D +D Sbjct: 107 MRYSLLAGGKRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHKVFGEDVAVLAGDALLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLND 243
BLAST of CK935804 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 5.065e-14 Identity = 52/168 (30.95%), Postives = 77/168 (45.83%), Query Frame = 1 Query: 235 KSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAPALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDD 738 KSY I L A MR+ + A + PALC+AACELVGG+ S IH++LP D L + KPT + F + +L DA+L F E +A S +S RI+R + E+ +A+G++G+V GQ ++ + D Sbjct: 80 KSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKRVRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHIVFGEDVAVLAGDALLAFAFEHIAVS--TLNVSSARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSEVD 244
BLAST of CK935804 vs. ExPASy Swiss-Prot
Match: GGR_ARATH (Geranylgeranyl pyrophosphate synthase-related protein, chloroplastic OS=Arabidopsis thaliana GN=GGR PE=2 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 8.639e-14 Identity = 48/161 (29.81%), Postives = 74/161 (45.96%), Query Frame = 1 Query: 235 KSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAP-ALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQ 714 ++YWT++ +I L +A MR+ V A AP +CVAACEL GG R S IH++LP D + + KP+ + + +L DA+ P + + S P ILR++ E+ R +GS G+ GQY +L+ Sbjct: 48 RTYWTTLITEINQKLDEAIPVKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGGDRLAAFPTACALEMVHAASLIHDDLPCMDDDP-VRRGKPSNHTVYGSGMAILAGDALFPLAFQHIVSHTPPDLVPRATILRLITEIARTVGSTGMAAGQYVDLE 207
BLAST of CK935804 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.288e-13 Identity = 43/135 (31.85%), Postives = 70/135 (51.85%), Query Frame = 1 Query: 325 MRHFVFAAPVNMAPALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCD 729 MR+ + A + P LC+AACELVGG S IH++LP D L + KPT + + + +L DA+L F E LAS+ + + + R++R + E+ +A+G++G+V GQ ++ D Sbjct: 103 MRYSLLAGGKRVRPVLCIAACELVGGEESLAMPARCAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATS-SEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLD 235
BLAST of CK935804 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 6.191e-12 Identity = 50/178 (28.09%), Postives = 80/178 (44.94%), Query Frame = 1 Query: 235 KSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAPALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVE 768 K Y S E I L +A MR+ + A + P LC+AACELVGG S I ++LP D L + KPT + F + +L A+L E L +D +S +++R + E+ +++G++G+V GQ +L + +D G+ D+E Sbjct: 82 KPYMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGGKRVRPILCLAACELVGGEERLAIQAACAVEMIHTMSLIKDDLPCMDNDDL-RRGKPTTHKVFGESVAILSGGALLALAFEHLTEAD----VSSKKMVRAVKELAKSIGTKGLVAGQAKDLSSEGLEQND---VGLEDLE 251 The following BLAST results are available for this feature:
BLAST of CK935804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CK935804 ID=CK935804; Name=CK935804; organism=Citrus sinensis; type=EST; length=852bpback to top |