CK936103

Overview
NameCK936103
Unique NameCK936103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936103_ssr30 microsatellite CK936103_ssr30:30..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK936103 vs. ExPASy Swiss-Prot
Match: RNF5_CAEEL (RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.832e-28
Identity = 66/165 (40.00%), Postives = 92/165 (55.76%), Query Frame = 2
Query:  155 SESTSVPSQNPSCVGNSANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGKTQTDPRSKSYPGIDIPSRPAGQRPETAPPPEASYFPNXXXXXXXXXXXXATARIGNFTMGFG---GLFPSLFNIQF-HGLMP 637
            +  T  PS+ P+   N  +++  FECNIC + A+D +V+LCGHLFCWPCL +WL    ++Q CPVCK+ +   K+VP+YGRG   +DPR K      +P RP GQR E  PPP++    N                  +F+ G G   GLFP +F + F  G+ P
Sbjct:    2 ASETKAPSEEPTSSSNK-DESARFECNICLDAAKDAVVSLCGHLFCWPCLSQWLDTRPNNQVCPVCKSAIDGNKVVPIYGRGGDSSDPRKK------VPPRPKGQRSE--PPPQSFAGFNWGGDGGMMGGGGPNV---HFSFGIGTVNGLFPLMFMLPFIQGIFP 154          
BLAST of CK936103 vs. ExPASy Swiss-Prot
Match: RN185_PONAB (RING finger protein 185 OS=Pongo abelii GN=RNF185 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.076e-27
Identity = 72/174 (41.38%), Postives = 92/174 (52.87%), Query Frame = 2
Query:  140 MASGFSESTSVPSQN----PSCVGNSANDAGG----FECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGKT-QTDPRSKSYPGIDIPSRPAGQRPETAPPPEASYFPNXXXXXXXXXXXXATARIGNFTMGFG------GLFPSLFNI 616
            MAS    ++S P  +    PS   N A ++GG    FECNIC + A+D +++LCGHLFCWPCL++WL    + Q CPVCKA +  +K++PLYGRG T Q DPR K+      P RP GQRPE   P     F                   G F M FG      G+F + FNI
Sbjct:    1 MASKGPSASSSPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE---PENRGGFQGFGFGD------------GGFQMSFGIGAFPFGIFATAFNI 153          
BLAST of CK936103 vs. ExPASy Swiss-Prot
Match: RN185_MOUSE (RING finger protein 185 OS=Mus musculus GN=Rnf185 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.406e-27
Identity = 71/174 (40.80%), Postives = 91/174 (52.30%), Query Frame = 2
Query:  137 LMASGFSESTSVPSQN---PSCVGNSANDAGG----FECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGKT-QTDPRSKSYPGIDIPSRPAGQRPETAPPPEASYFPNXXXXXXXXXXXXATARIGNFTMGFG------GLFPSLFNI 616
            + + G S S S  + N   PS   N   ++GG    FECNIC + A+D +++LCGHLFCWPCL++WL    + Q CPVCKA +  +K++PLYGRG T Q DPR K+      P RP GQRPE   P     F                   G F M FG      G+F + FNI
Sbjct:    1 MASKGPSASASTENSNAGGPSGSSNGTGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE---PENRGGFQGFGFGD------------GGFQMSFGIGAFPFGIFATAFNI 153          
BLAST of CK936103 vs. ExPASy Swiss-Prot
Match: RN185_RAT (RING finger protein 185 OS=Rattus norvegicus GN=Rnf185 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.836e-27
Identity = 68/165 (41.21%), Postives = 86/165 (52.12%), Query Frame = 2
Query:  143 ASGFSESTSVPSQNPSCVGNSANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGKT-QTDPRSKSYPGIDIPSRPAGQRPETAPPPEASYFPNXXXXXXXXXXXXATARIGNFTMGFG------GLFPSLFNI 616
            AS  + S   PS + +  G S      FECNIC + A+D +++LCGHLFCWPCL++WL    + Q CPVCKA +  +K++PLYGRG T Q DPR K+      P RP GQRPE   P     F                   G F M FG      G+F + FNI
Sbjct:   10 ASTENSSAGGPSGSSNGTGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE---PENRGGFQGFGFGD------------GGFQMSFGIGAFPFGIFATAFNI 153          
BLAST of CK936103 vs. ExPASy Swiss-Prot
Match: RN185_HUMAN (RING finger protein 185 OS=Homo sapiens GN=RNF185 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.836e-27
Identity = 68/165 (41.21%), Postives = 86/165 (52.12%), Query Frame = 2
Query:  143 ASGFSESTSVPSQNPSCVGNSANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGKT-QTDPRSKSYPGIDIPSRPAGQRPETAPPPEASYFPNXXXXXXXXXXXXATARIGNFTMGFG------GLFPSLFNI 616
            AS  + S   PS + +  G S      FECNIC + A+D +++LCGHLFCWPCL++WL    + Q CPVCKA +  +K++PLYGRG T Q DPR K+      P RP GQRPE   P     F                   G F M FG      G+F + FNI
Sbjct:   10 ASPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE---PENRGGFQGFGFGD------------GGFQMSFGIGAFPFGIFATAFNI 153          
BLAST of CK936103 vs. ExPASy Swiss-Prot
Match: RN185_DANRE (RING finger protein 185 OS=Danio rerio GN=rnf185 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.836e-27
Identity = 70/172 (40.70%), Postives = 91/172 (52.91%), Query Frame = 2
Query:  143 ASGFSESTSVPSQNPSCVGNSANDAGG-------FECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGKT-QTDPRSKSYPGIDIPSRPAGQRPETAPPPEASYFPNXXXXXXXXXXXXATARIGNFTMGFG------GLFPSLFNI 616
            A+  S S+S  S   +  G SA ++GG       FECNIC + ++D +++LCGHLFCWPCL++WL    + Q CPVCKA +  +K++PLYGRG T Q DPR K+      P RP GQRPE   P     F                   G F M FG      G+F + FNI
Sbjct:    5 AASESSSSSSSSSAGAANGQSAGESGGGGAQDSTFECNICLDTSKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE---PENRGGFQGFGFGD------------GGFQMSFGIGAFPFGIFATAFNI 155          
BLAST of CK936103 vs. ExPASy Swiss-Prot
Match: RN185_CHICK (RING finger protein 185 OS=Gallus gallus GN=RNF185 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.341e-27
Identity = 70/167 (41.92%), Postives = 88/167 (52.69%), Query Frame = 2
Query:  143 ASGFSESTSVPSQNPSC--VGNSANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGKT-QTDPRSKSYPGIDIPSRPAGQRPETAPPPEASYFPNXXXXXXXXXXXXATARIGNFTMGFG------GLFPSLFNI 616
            AS  S ST   S + S    G++ N    FECNIC + A+D +++LCGHLFCWPCL++WL    + Q CPVCKA +  +K++PLYGRG T Q DPR K+      P RP GQRPE   P     F                   G F M FG      G+F + FNI
Sbjct:   10 ASTKSSSTGGTSGSSSSNGAGDNTNQDNTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE---PENRGGFQGFGFGD------------GGFQMSFGIGAFPFGIFATAFNI 155          
BLAST of CK936103 vs. ExPASy Swiss-Prot
Match: RNF5_RAT (E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.231e-23
Identity = 58/125 (46.40%), Postives = 72/125 (57.60%), Query Frame = 2
Query:  140 MASGFSESTSVPSQNPSCVGNSANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGKTQ-TDPRSKSYPGIDIPSRPAGQRPETAPPPEASYFP 511
            MA+   E       N    G SA     FECNIC E A++ +V++CGHL+CWPCL++WL      QECPVCKA +  EK+VPLYGRG  +  DPR K+      P RP GQRP  AP     + P
Sbjct:    1 MAAAEEEDGGPEGPNRERGGASAT----FECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGISREKVVPLYGRGSQKPQDPRLKT------PPRPQGQRP--APESRGGFQP 113          
BLAST of CK936103 vs. ExPASy Swiss-Prot
Match: RNF5_MOUSE (E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.231e-23
Identity = 58/125 (46.40%), Postives = 72/125 (57.60%), Query Frame = 2
Query:  140 MASGFSESTSVPSQNPSCVGNSANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGKTQ-TDPRSKSYPGIDIPSRPAGQRPETAPPPEASYFP 511
            MA+   E       N    G SA     FECNIC E A++ +V++CGHL+CWPCL++WL      QECPVCKA +  EK+VPLYGRG  +  DPR K+      P RP GQRP  AP     + P
Sbjct:    1 MAAAEEEDGGPEGPNRERGGASAT----FECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGISREKVVPLYGRGSQKPQDPRLKT------PPRPQGQRP--APESRGGFQP 113          
BLAST of CK936103 vs. ExPASy Swiss-Prot
Match: RNF5_HUMAN (E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.231e-23
Identity = 51/97 (52.58%), Postives = 64/97 (65.98%), Query Frame = 2
Query:  224 FECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGKTQ-TDPRSKSYPGIDIPSRPAGQRPETAPPPEASYFP 511
            FECNIC E A++ +V++CGHL+CWPCL++WL      QECPVCKA +  EK+VPLYGRG  +  DPR K+      P RP GQRP  AP     + P
Sbjct:   25 FECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRGSQKPQDPRLKT------PPRPQGQRP--APESRGGFQP 113          
The following BLAST results are available for this feature:
BLAST of CK936103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RNF5_CAEEL2.832e-2840.00RING finger protein 5 OS=Caenorhabditis elegans GN... [more]
RN185_PONAB1.076e-2741.38RING finger protein 185 OS=Pongo abelii GN=RNF185 ... [more]
RN185_MOUSE1.406e-2740.80RING finger protein 185 OS=Mus musculus GN=Rnf185 ... [more]
RN185_RAT1.836e-2741.21RING finger protein 185 OS=Rattus norvegicus GN=Rn... [more]
RN185_HUMAN1.836e-2741.21RING finger protein 185 OS=Homo sapiens GN=RNF185 ... [more]
RN185_DANRE1.836e-2740.70RING finger protein 185 OS=Danio rerio GN=rnf185 P... [more]
RN185_CHICK5.341e-2741.92RING finger protein 185 OS=Gallus gallus GN=RNF185... [more]
RNF5_RAT1.231e-2346.40E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegi... [more]
RNF5_MOUSE1.231e-2346.40E3 ubiquitin-protein ligase RNF5 OS=Mus musculus G... [more]
RNF5_HUMAN1.231e-2352.58E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens G... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004386_H02 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0003_IVF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936103 ID=CK936103; Name=CK936103; organism=Citrus sinensis; type=EST; length=867bp
GGGGACCCTCGAATCTNNNAGGGCAGCAGTATTATTATTATTATTATTAA
TCAAATTGCAGGCGGTTCGGGTTTTGTCATTTATCCAATATCACCTGTCT
TTCGTTCTCTCATTTGAGACTAGCCGATCAATCTAATTGATGGCTAGTGG
TTTTTCGGAATCAACAAGTGTGCCGTCTCAAAACCCATCTTGCGTAGGCA
ATAGTGCCAATGATGCTGGTGGTTTTGAATGCAATATCTGCTTTGAATTA
GCTCAAGACCCAATTGTTACTCTTTGTGGCCACCTCTTTTGCTGGCCTTG
CCTATACAGATGGCTGCACCATCACTCTCATTCACAGGAATGCCCCGTGT
GCAAGGCTGTTGTCCAAGAGGAGAAATTGGTTCCTCTTTATGGTAGGGGC
AAAACCCAGACTGACCCACGATCAAAATCCTATCCGGGCATTGATATTCC
TAGTCGTCCCGCAGGGCAAAGACCCGAGACAGCTCCGCCTCCGGAAGCGA
GTTACTTTCCCAACTTGGGATTTGGATTAATGGGAGGATTGATGCCGATG
GCGACTGCAAGGATTGGTAACTTTACCATGGGTTTTGGTGGTCTTTTCCC
TTCATTGTTTAATATTCAGTTTCATGGGTTGATGCCATAGTTTATGGAAC
CACCTCTGGTTTTCCCAATGGCTTTAGTGCTTTTCATGGTGGTCATGTTC
ATGGATTTCCTCAGCCAAGTCGAGGGCAGCAGGCCGACAATGTTTTGAAG
AATCTTCTTCTGTTGATTGGCCTCTTTGTGATCCTTGCTCTGCTTTTTTG
GTAAATAAATTTTTTGATTGAACTCAATGTCATATTGGTTGTTTTGACTG
TCTGTAAATACTTTAGC
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