Clementine/SweetBloodOrange-F1 | Citrus Genome Database

Map Overview


Name	Clementine/SweetBloodOrange-F1
Species	Citrus spp.
Analysis method	Kruskal-Wallis
Software	MapQTL 6
Map type	genetic
Population type	F1
Population size	77
Map unit	cM
Maternal parent	SRA 63
Paternal parent	SRA 301
Number of loci	710
Number of QTL	20
Number of linkage groups	9
Publication	[view all]
Contact	Patrick Ollitrault Francois Luro

Stock

Name

Type

Details

SRA 63/SRA 301-F1

population

Contact

Name

Details

Patrick Ollitrault

First name:	Patrick
Last name:	Ollitrault
Title:	Researcher
Institution:	CIRAD
Address:	Unite de Recherche Multiplication Vegetative, Centre de Cooperation Internationale en Recherche Agronomique pour le Developpement (CIRAD), Montpellier 34398, France
Country:	France
Email:	patrick.ollitrault@cirad.fr
Phone:	+33(0)467615971
Fax:	+33(0)467615666
Last update:	Jun 2020

Francois Luro

First name:	Francois
Last name:	Luro
Title:	Researcher
Institution:	INRA
Address:	1INRA, Unite de Recherche GEQA, INRA San Giuliano, 20230 San Nicolao, France
Country:	France
Email:	luro@corse.inra.fr

Publication


Year	Publications
2023	Ferrer V, Costantino G, Paymal N, Quinton C, Perdomo EC, Paoli M, Mournet P, Ollitrault P, Tomi F, Luro F. Inheritance and Quantitative Trait Loci Mapping of Aromatic Compounds from Clementine (Citrus × clementina Hort. ex Tan.) and Sweet Orange (C. × sinensis (L.) Osb.) Fruit Essential Oils.. Genes. 2023 Sep 14; 14(9).

Map Loci

This map contains 710 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Clementine/SweetBloodOrange-F1.LG4	scaffold_4_21363612	scaffold_4_21363612	marker_locus	70.69 cM
Clementine/SweetBloodOrange-F1.LG4	scaffold_4_20828001	scaffold_4_20828001	marker_locus	71.55 cM
Clementine/SweetBloodOrange-F1.LG4	scaffold_4_20981009	scaffold_4_20981009	marker_locus	74.04 cM
Clementine/SweetBloodOrange-F1.LG4	scaffold_4_21302241	scaffold_4_21302241	marker_locus	75.4 cM
Clementine/SweetBloodOrange-F1.LG4	scaffold_4_22302429	scaffold_4_22302429	marker_locus	80.29 cM
Clementine/SweetBloodOrange-F1.LG4	scaffold_4_22393840	scaffold_4_22393840	marker_locus	83.27 cM
Clementine/SweetBloodOrange-F1.LG4	scaffold_4_22543073	scaffold_4_22543073	marker_locus	85.34 cM
Clementine/SweetBloodOrange-F1.LG4	scaffold_4_23594249	scaffold_4_23594249	marker_locus	98.19 cM
Clementine/SweetBloodOrange-F1.LG4	scaffold_4_24131447	scaffold_4_24131447	marker_locus	101.74 cM
Clementine/SweetBloodOrange-F1.LG4	scaffold_4_24404859	scaffold_4_24404859	marker_locus	102.99 cM
Clementine/SweetBloodOrange-F1.LG4	scaffold_4_24332363	scaffold_4_24332363	marker_locus	110.27 cM
Clementine/SweetBloodOrange-F1.LG5	scaffold_5_421910	scaffold_5_421910	marker_locus	0 cM
Clementine/SweetBloodOrange-F1.LG5	scaffold_5_1322498	scaffold_5_1322498	marker_locus	2.94 cM
Clementine/SweetBloodOrange-F1.LG5	scaffold_5_1334031	scaffold_5_1334031	marker_locus	3.56 cM
Clementine/SweetBloodOrange-F1.LG5	scaffold_5_1891859	scaffold_5_1891859	marker_locus	4.82 cM
Clementine/SweetBloodOrange-F1.LG5	scaffold_5_2040338	scaffold_5_2040338	marker_locus	5.65 cM
Clementine/SweetBloodOrange-F1.LG5	scaffold_5_2137822	scaffold_5_2137822	marker_locus	8.19 cM
Clementine/SweetBloodOrange-F1.LG5	scaffold_5_2405953	scaffold_5_2405953	marker_locus	8.64 cM
Clementine/SweetBloodOrange-F1.LG5	scaffold_5_3265358	scaffold_5_3265358	marker_locus	11.12 cM
Clementine/SweetBloodOrange-F1.LG5	scaffold_5_2456101	scaffold_5_2456101	marker_locus	12.29 cM
Clementine/SweetBloodOrange-F1.LG5	scaffold_5_3283171	scaffold_5_3283171	marker_locus	12.7 cM
Clementine/SweetBloodOrange-F1.LG5	scaffold_5_3149887	scaffold_5_3149887	marker_locus	15.19 cM
Clementine/SweetBloodOrange-F1.LG5	scaffold_5_4976190	scaffold_5_4976190	marker_locus	16.87 cM
Clementine/SweetBloodOrange-F1.LG5	scaffold_5_4900505	scaffold_5_4900505	marker_locus	17.88 cM
Clementine/SweetBloodOrange-F1.LG5	scaffold_5_4980065	scaffold_5_4980065	marker_locus	18.77 cM

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Map QTL

This map contains 20 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Clementine/SweetBloodOrange-F1.LG5	qAPICONC.Clementine/SweetBloodOrange.LG5	QTL	5 cM	27 cM	21 cM
Clementine/SweetBloodOrange-F1.LG8	qAPICONC.Clementine/SweetBloodOrange.LG8	QTL	67 cM	73 cM	67 cM
Clementine/SweetBloodOrange-F1.LG8	qSACONC.Clementine/SweetBloodOrange.LG8	QTL	65 cM	67 cM	67 cM
Clementine/SweetBloodOrange-F1.LG8	qBPICONC.Clementine/SweetBloodOrange.LG8	QTL	65 cM	67 cM	67 cM
Clementine/SweetBloodOrange-F1.LG8	qOCTCONC.Clementine/SweetBloodOrange.LG8	QTL	46 cM	77 cM	75 cM
Clementine/SweetBloodOrange-F1.LG9	qLCONC.Clementine/SweetBloodOrange.LG9	QTL	89 cM	95 cM	90 cM
Clementine/SweetBloodOrange-F1.LG8	qLCONC.Clementine/SweetBloodOrange.LG8	QTL	65 cM	67 cM	67 cM
Clementine/SweetBloodOrange-F1.LG5	qCICONC.Clementine/SweetBloodOrange.LG5	QTL	21 cM	37 cM	37 cM
Clementine/SweetBloodOrange-F1.LG8	qDECONC.Clementine/SweetBloodOrange.LG8	QTL	46 cM	78 cM	77 cM
Clementine/SweetBloodOrange-F1.LG5	qNCONC.Clementine/SweetBloodOrange.LG5	QTL	28 cM	30 cM	30 cM
Clementine/SweetBloodOrange-F1.LG5	qGECONC.Clementine/SweetBloodOrange.LG5	QTL	28 cM	42 cM	30 cM
Clementine/SweetBloodOrange-F1.LG8	qL10CONC.Clementine/SweetBloodOrange.LG8	QTL	48 cM	77 cM	52 cM
Clementine/SweetBloodOrange-F1.LG8	qDOCONC.Clementine/SweetBloodOrange.LG8	QTL	48 cM	78 cM	77 cM
Clementine/SweetBloodOrange-F1.LG3	qVALCONC.Clementine/SweetBloodOrange.LG3	QTL	96 cM	104 cM	104 cM
Clementine/SweetBloodOrange-F1.LG6	qAFCONC.Clementine/SweetBloodOrange.LG6	QTL	34 cM	51 cM	51 cM
Clementine/SweetBloodOrange-F1.LG1	qDCACONC.Clementine/SweetBloodOrange.LG1	QTL	63 cM	79 cM	79 cM
Clementine/SweetBloodOrange-F1.LG6	qDCACONC.Clementine/SweetBloodOrange.LG6	QTL	66 cM	73 cM	73 cM
Clementine/SweetBloodOrange-F1.LG8	qASCONC.Clementine/SweetBloodOrange.LG8	QTL	34 cM	64 cM	63 cM
Clementine/SweetBloodOrange-F1.LG5	qPEO.Clementine/SweetBloodOrange.LG5	QTL	3 cM	21 cM	8 cM
Clementine/SweetBloodOrange-F1.LG8	qPEO.Clementine/SweetBloodOrange.LG8	QTL	0 cM	13 cM	9 cM

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