EY736111

Overview
NameEY736111
Unique NameEY736111
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 1.923e-72
Identity = 117/155 (75.48%), Postives = 134/155 (86.45%), Query Frame = 3
Query:   18 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVXGGPXGIPT 482
            MASSMISS TVAT +RA+ AQA+MVAPFTGLKS++AFPAT+K+NNDITS+ASNGGRVQCMKVWPP GL+KFETLSYLPPLS E+L K+I YL+  GWIPCLEFELE  +VYRE++ SPGYYDGRYW MWKLPM+GCTDATQVL E+       PT
Sbjct:    1 MASSMISSATVATVSRATPAQATMVAPFTGLKSTAAFPATRKSNNDITSLASNGGRVQCMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPT 155          

HSP 2 Score: 47.3654 bits (111), Expect = 1.923e-72
Identity = 22/33 (66.67%), Postives = 25/33 (75.76%), Query Frame = 1
Query:  460 EVXKEYPHSFVRIIGX*HKRQVQCISFLAAKPP 558
            E  K YP S +RIIG  +KRQVQCISF+A KPP
Sbjct:  148 EASKTYPTSHIRIIGFDNKRQVQCISFIAYKPP 180          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.469e-69
Identity = 113/146 (77.40%), Postives = 126/146 (86.30%), Query Frame = 3
Query:   18 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEV 455
            MASSM+S+  VA  NRAS AQASMVAPFTGLKS+SAFP T+KT  DITSIASNGGRVQCM+VWPP G K +ETLSYLPPL+ E L KE+ YLLR GW+PCLEFELE G VYRE+H SPGYYDGRYWTMWKLPM+GCTDA QVL+E+
Sbjct:    1 MASSMLSTAAVACINRASPAQASMVAPFTGLKSTSAFPTTRKTTTDITSIASNGGRVQCMQVWPPRGKKFYETLSYLPPLTREQLAKEVEYLLRKGWVPCLEFELEHGTVYREYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQEL 146          

HSP 2 Score: 42.743 bits (99), Expect = 1.469e-69
Identity = 21/34 (61.76%), Postives = 24/34 (70.59%), Query Frame = 1
Query:  460 EVXKEYPHSFVRIIGX*HKRQVQCISFLAAKPPG 561
            E+ K YP  + RIIG  + RQVQCISFLA KP G
Sbjct:  148 EMIKAYPDCYGRIIGFDNVRQVQCISFLAYKPKG 181          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 9.424e-69
Identity = 112/155 (72.26%), Postives = 132/155 (85.16%), Query Frame = 3
Query:   18 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNN-DITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVXGGPXGIP 479
            MASS++SS  VAT  R+++AQASMVAPFTGLKS+++FP TKK NN DITS+ASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YLL++GW+PCLEFE E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVL EV       P
Sbjct:    1 MASSIVSSAAVAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYP 153          

HSP 2 Score: 44.2838 bits (103), Expect = 9.424e-69
Identity = 20/34 (58.82%), Postives = 25/34 (73.53%), Query Frame = 1
Query:  460 EVXKEYPHSFVRIIGX*HKRQVQCISFLAAKPPG 561
            E  K YP +++RIIG  + RQVQCISF+A KP G
Sbjct:  147 EAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2)

HSP 1 Score: 233.417 bits (594), Expect = 2.726e-68
Identity = 113/159 (71.07%), Postives = 131/159 (82.39%), Query Frame = 3
Query:   18 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVXGGPXGIP-TFIR 491
            MASSMISS T+AT N +S AQA+MVAPFTGLKS+SAFP T+K NNDITS+ASNGGRVQCM+VWPP G KKFETLSYLP L+   L KE+ YLLRS WIPCLEFELE+G+V+R++ S P YYDGRYWTMWKLPM+GCTD+ QVL+E+       P  FIR
Sbjct:    1 MASSMISSATIATVNCSSPAQANMVAPFTGLKSASAFPVTRKANNDITSLASNGGRVQCMQVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELEEGFVHRKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLEELENCKKEYPNAFIR 159          

HSP 2 Score: 47.3654 bits (111), Expect = 2.726e-68
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 1
Query:  469 KEYPHSFVRIIGX*HKRQVQCISFLAAKPPG 561
            KEYP++F+RIIG  + RQVQCISF+A KP G
Sbjct:  151 KEYPNAFIRIIGFDNVRQVQCISFIAYKPKG 181          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 2.726e-68
Identity = 111/154 (72.08%), Postives = 129/154 (83.77%), Query Frame = 3
Query:   18 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVXGGPXGIP 479
            MASS++SS  VAT  R+++AQA+MVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS E LL EI YLL+SGW+PCLEFE E+G+VYREHH SPGYYDGRYWTMWKLPM+GCTDATQVL EV       P
Sbjct:    1 MASSVLSSAAVAT--RSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEIEYLLKSGWVPCLEFETERGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYP 152          

HSP 2 Score: 44.669 bits (104), Expect = 2.726e-68
Identity = 21/34 (61.76%), Postives = 25/34 (73.53%), Query Frame = 1
Query:  460 EVXKEYPHSFVRIIGX*HKRQVQCISFLAAKPPG 561
            E  K YP ++VRIIG  + RQVQCISF+A KP G
Sbjct:  146 EAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS0_SOLTU (Ribulose bisphosphate carboxylase small chain C, chloroplastic OS=Solanum tuberosum GN=RBCS-C PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.554e-68
Identity = 112/155 (72.26%), Postives = 132/155 (85.16%), Query Frame = 3
Query:   18 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNN-DITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVXGGPXGIP 479
            MASS++SS  VAT  R+++AQASMVAPFTGLKS+++FP TKK NN DITS+ASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YLL++GW+PCLEFE E G+VYREH+SSPGYYDGRYWTMWKLPM+GCTD TQVL EV       P
Sbjct:    1 MASSIVSSAAVAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYREHNSSPGYYDGRYWTMWKLPMFGCTDGTQVLAEVQEAKNAYP 153          

HSP 2 Score: 42.3578 bits (98), Expect = 3.554e-68
Identity = 19/34 (55.88%), Postives = 24/34 (70.59%), Query Frame = 1
Query:  460 EVXKEYPHSFVRIIGX*HKRQVQCISFLAAKPPG 561
            E    YP +++RIIG  + RQVQCISF+A KP G
Sbjct:  147 EAKNAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS1_SOLLC (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum lycopersicum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 6.045e-68
Identity = 111/155 (71.61%), Postives = 132/155 (85.16%), Query Frame = 3
Query:   18 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNN-DITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVXGGPXGIP 479
            MASS++SS   AT  R+++AQASMVAPFTGLKS+++FP TKK NN DITS+ASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LL EI YLL++GW+PCLEFE E+G+VYRE++SSPGYYDGRYWTMWKLPM+GCTDATQVL EV       P
Sbjct:    1 MASSIVSSAAAAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETERGFVYRENNSSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYP 153          

HSP 2 Score: 44.669 bits (104), Expect = 6.045e-68
Identity = 21/34 (61.76%), Postives = 25/34 (73.53%), Query Frame = 1
Query:  460 EVXKEYPHSFVRIIGX*HKRQVQCISFLAAKPPG 561
            E  K YP ++VRIIG  + RQVQCISF+A KP G
Sbjct:  147 EAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS2A_SOLLC (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum lycopersicum GN=RBCS-2A PE=2 SV=2)

HSP 1 Score: 234.572 bits (597), Expect = 7.885e-68
Identity = 112/154 (72.73%), Postives = 127/154 (82.47%), Query Frame = 3
Query:   18 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVXGGPXGIP 479
            MASS+ISS  VAT  R+++ QASMVAPFTGLKSS+ FP TKK N DITSIASNGGRV CM+VWPP  +KK+ETLSYLP LSDE LL EI YLL++GW+PCLEFE E G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV       P
Sbjct:    1 MASSVISSAAVAT--RSNVTQASMVAPFTGLKSSATFPVTKKQNLDITSIASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYP 152          

HSP 2 Score: 44.669 bits (104), Expect = 7.885e-68
Identity = 21/34 (61.76%), Postives = 25/34 (73.53%), Query Frame = 1
Query:  460 EVXKEYPHSFVRIIGX*HKRQVQCISFLAAKPPG 561
            E  K YP ++VRIIG  + RQVQCISF+A KP G
Sbjct:  146 EAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS2_PETHY (Ribulose bisphosphate carboxylase small chain SSU11A, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 1.028e-67
Identity = 110/154 (71.43%), Postives = 127/154 (82.47%), Query Frame = 3
Query:   18 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVXGGPXGIP 479
            MASS++SS  VAT+  A  AQASMVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP G KK+ETLSYLP L+DE LLKEI YLL  GW+PCLEFE E G+VYRE+H+SP YYDGRYWTMWKLPM+GCTDATQVL E+       P
Sbjct:    1 MASSVMSSAAVATSTNA--AQASMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYP 152          

HSP 2 Score: 47.7506 bits (112), Expect = 1.028e-67
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 1
Query:  460 EVXKEYPHSFVRIIGX*HKRQVQCISFLAAKPPG 561
            E  K YP++++RIIG  + RQVQCISF+A KPPG
Sbjct:  146 EAKKAYPNAWIRIIGFDNVRQVQCISFIAYKPPG 179          
BLAST of EY736111 vs. ExPASy Swiss-Prot
Match: RBS3B_SOLLC (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Solanum lycopersicum GN=RBCS-3B PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.974e-67
Identity = 110/154 (71.43%), Postives = 127/154 (82.47%), Query Frame = 3
Query:   18 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVXGGPXGIP 479
            MASS++SS  VAT  R + AQASMVAPFTGLKS+++FP ++K N DITSIASNGGRV CM+VWPP  +KK+ETLSYLP LSDE LL EI YLL++GW+PCLEFE E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVL EV       P
Sbjct:    1 MASSIVSSAAVAT--RGNGAQASMVAPFTGLKSTASFPVSRKQNLDITSIASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYP 152          

HSP 2 Score: 44.669 bits (104), Expect = 2.974e-67
Identity = 21/34 (61.76%), Postives = 25/34 (73.53%), Query Frame = 1
Query:  460 EVXKEYPHSFVRIIGX*HKRQVQCISFLAAKPPG 561
            E  K YP ++VRIIG  + RQVQCISF+A KP G
Sbjct:  146 EAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
The following BLAST results are available for this feature:
BLAST of EY736111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
RBS_FAGCR1.923e-7275.48Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HEVBR1.469e-6977.40Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_SOLTU9.424e-6972.26Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS_GOSHI2.726e-6871.07Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS8_NICPL2.726e-6872.08Ribulose bisphosphate carboxylase small chain 8B, ... [more]
RBS0_SOLTU3.554e-6872.26Ribulose bisphosphate carboxylase small chain C, c... [more]
RBS1_SOLLC6.045e-6871.61Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS2A_SOLLC7.885e-6872.73Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS2_PETHY1.028e-6771.43Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS3B_SOLLC2.974e-6771.43Ribulose bisphosphate carboxylase small chain 3B, ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-012-B02-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736111 ID=EY736111; Name=EY736111; organism=Citrus sinensis; type=EST; length=889bp
CCACGCGTCCGGTACCAATGGCTTCCTCAATGATCTCATCGACCACCGTT
GCCACCGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTT
CACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAACA
ATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAG
GTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCC
GCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCT
CCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTAC
CGTGAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAAT
GTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGG
AGGTTNGGGGAGGTCCANAAGGAATACCCACATTCATTCGTCCGAATTAT
CGGATNNTGACACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCA
AGCCACCAGGCGTCTAGGTTCCCAATTAAATGTGTGTAACCACCCATGCA
AAATTGTTGATTATTATTATGGTGTAACCCCCATAATGATCATTCGATCA
NTGGGGGGGTTCGGGTTGGCGTTTAATTTGGACTTAGGCCGGTTGTTGCT
GCTGCTCAGACCTTTTGTGGGTCTCTCCCCGAATTTTGGCTTTTTTTTTA
TATATATTTTAATAAATGGAATCCTTTGTTCCCAGCTCCATCAATCTGGG
TCCCGGATGTTCAGTTAAGGAGGTTAGAGTGTCTGGAATTTAGAAAACAA
AAAAAGGGGGGCCGCTCTTCAAGGATCCATCCTCGCTCT
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