EY735754

Overview
NameEY735754
Unique NameEY735754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735754 vs. ExPASy Swiss-Prot
Match: RU17_ARATH (U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1 PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 6.076e-63
Identity = 116/170 (68.24%), Postives = 131/170 (77.06%), Query Frame = 1
Query:  145 MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRAPLEYKPPPEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAXTPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYNTLFVARLSYETTESKIQREFESYGPINGVRIL 654
            MGD  D F+RN NAAVQAR K QNRANVLQLKL+GQSHPTGLT NLLKLFEPR PLEYKPPPEKRKCPP TGMAQFVS+FAEPGDP YAPP  +   P ++R RIH                 YDP+NDPN +GDPY TLFV+RL+YE++ESKI+REFESYGPI  V ++
Sbjct:    1 MGDSGDPFLRNPNAAVQARAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKPPPEKRKCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAEDLKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLV 170          
BLAST of EY735754 vs. ExPASy Swiss-Prot
Match: RU17_MOUSE (U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus GN=Snrnp70 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 5.204e-22
Identity = 58/140 (41.43%), Postives = 75/140 (53.57%), Query Frame = 1
Query:  268 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAXTPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYNTLFVARLSYETTESKIQREFESYGPINGVRILRHPKWG 672
            L  NLL LF PR P+ Y PP      EK    P  G+A ++  F +P D   APP  +A T  ER  R                   +DPHNDPN  GD + TLFVAR++Y+TTESK++REFE YGPI  + ++   + G
Sbjct:    5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSG 141          
BLAST of EY735754 vs. ExPASy Swiss-Prot
Match: RU17_HUMAN (U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens GN=SNRNP70 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 5.204e-22
Identity = 58/140 (41.43%), Postives = 75/140 (53.57%), Query Frame = 1
Query:  268 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAXTPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYNTLFVARLSYETTESKIQREFESYGPINGVRILRHPKWG 672
            L  NLL LF PR P+ Y PP      EK    P  G+A ++  F +P D   APP  +A T  ER  R                   +DPHNDPN  GD + TLFVAR++Y+TTESK++REFE YGPI  + ++   + G
Sbjct:    5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSG 141          
BLAST of EY735754 vs. ExPASy Swiss-Prot
Match: RU17_BOVIN (U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus GN=SNRNP70 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.204e-22
Identity = 58/140 (41.43%), Postives = 75/140 (53.57%), Query Frame = 1
Query:  268 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAXTPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYNTLFVARLSYETTESKIQREFESYGPINGVRILRHPKWG 672
            L  NLL LF PR P+ Y PP      EK    P  G+A ++  F +P D   APP  +A T  ER  R                   +DPHNDPN  GD + TLFVAR++Y+TTESK++REFE YGPI  + ++   + G
Sbjct:    5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSG 141          
BLAST of EY735754 vs. ExPASy Swiss-Prot
Match: RU17_XENTR (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis GN=snrnp70 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.373e-21
Identity = 57/140 (40.71%), Postives = 75/140 (53.57%), Query Frame = 1
Query:  268 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAXTPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYNTLFVARLSYETTESKIQREFESYGPINGVRILRHPKWG 672
            L  NLL LF PR P+ Y PP      EK    P  G+A ++  F +P D   APP  +A T  ER  R                   +DPHND N  GD + TLFVAR++Y+TTESK++REFE YGPI  + ++ + + G
Sbjct:    5 LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSG 141          
BLAST of EY735754 vs. ExPASy Swiss-Prot
Match: RU17_XENLA (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis GN=snrnp70 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.373e-21
Identity = 57/134 (42.54%), Postives = 72/134 (53.73%), Query Frame = 1
Query:  268 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAXTPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYNTLFVARLSYETTESKIQREFESYGPINGVRIL 654
            L  NLL LF PR P+ Y PP      EK    P  G+A ++  F +P D   APP  +A T  ER  R                   +DPHND N  GD + TLFVAR++Y+TTESK++REFE YGPI  + I+
Sbjct:    5 LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHIV 135          
BLAST of EY735754 vs. ExPASy Swiss-Prot
Match: RU17_SCHPO (U1 small nuclear ribonucleoprotein 70 kDa homolog OS=Schizosaccharomyces pombe GN=usp101 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.851e-19
Identity = 55/139 (39.57%), Postives = 78/139 (56.12%), Query Frame = 1
Query:  268 LTANLLKLFEPRAPLEYKPP----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAXTPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYNTLFVARLSYETTESKIQREFESYGPINGVRILRHPKWG 672
            L A LL LF PR PL Y PP    PEKR  P ++G+A+++  +A+  D  Y P      +  E+R R+                  +DP +D +V GDPY T+F++RLSY+T ES I+REF  YGPI  +R++R+   G
Sbjct:    5 LPAPLLALFAPRPPLRYLPPMDVPPEKRSTPRVSGIAKYLK-YAQSHDQQYHP----TESLEEKRLRLRDEKQKQQRERLRSMIKVWDPDHDRHVIGDPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTG 138          
BLAST of EY735754 vs. ExPASy Swiss-Prot
Match: RU17_DROME (U1 small nuclear ribonucleoprotein 70 kDa OS=Drosophila melanogaster GN=snRNP70K PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.621e-15
Identity = 48/139 (34.53%), Postives = 72/139 (51.80%), Query Frame = 1
Query:  268 LTANLLKLFEPRAPLEYKPP----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAXTPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYNTLFVARLSYETTESKIQREFESYGPINGVRILRHPKWG 672
            L  NLL LF  R P+ + PP    P ++K     G+A+F++ F +P D      VE     +ERR R                   +DP    N + DP+ TLF+AR++Y+T+ESK++REFE YGPI  + ++   + G
Sbjct:    5 LPPNLLALFAAREPIPFMPPVDKLPHEKKSRGYLGVAKFMADFEDPKDTPLPKTVETRQERLERRRR---EKAEQVAYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESG 140          
BLAST of EY735754 vs. ExPASy Swiss-Prot
Match: RU17_DICDI (U1 small nuclear ribonucleoprotein 70 kDa OS=Dictyostelium discoideum GN=snrnp70 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.051e-14
Identity = 41/132 (31.06%), Postives = 68/132 (51.52%), Query Frame = 1
Query:  268 LTANLLKLFEPRAPLEYKPPPEKRKCPPLTGMAQFVSHFAEPG--DPLYAPPVEKAXTPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYNTLFVARLSYETTESKIQREFESYGPINGVRILR 657
            L  NL  +F PR P  + PPP     PP TG+  ++S F +P   +P     +E      E+R +                   +DP+++   +GDPY T+FV+R+SY+TT+ K++ EF  +GPI  + +++
Sbjct:    4 LPPNLKIMFNPRHPPPFLPPPPPSNLPPYTGLRDYLSIFTDPSNEEPFKKEHIENLE---EKREKKRKLKISENDERISKSLKAWDPYSNSETTGDPYKTIFVSRISYKTTQQKLEFEFGQFGPIKSLFLVK 132          
The following BLAST results are available for this feature:
BLAST of EY735754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
RU17_ARATH6.076e-6368.24U1 small nuclear ribonucleoprotein 70 kDa OS=Arabi... [more]
RU17_MOUSE5.204e-2241.43U1 small nuclear ribonucleoprotein 70 kDa OS=Mus m... [more]
RU17_HUMAN5.204e-2241.43U1 small nuclear ribonucleoprotein 70 kDa OS=Homo ... [more]
RU17_BOVIN5.204e-2241.43U1 small nuclear ribonucleoprotein 70 kDa OS=Bos t... [more]
RU17_XENTR3.373e-2140.71U1 small nuclear ribonucleoprotein 70 kDa OS=Xenop... [more]
RU17_XENLA3.373e-2142.54U1 small nuclear ribonucleoprotein 70 kDa OS=Xenop... [more]
RU17_SCHPO1.851e-1939.57U1 small nuclear ribonucleoprotein 70 kDa homolog ... [more]
RU17_DROME1.621e-1534.53U1 small nuclear ribonucleoprotein 70 kDa OS=Droso... [more]
RU17_DICDI1.051e-1431.06U1 small nuclear ribonucleoprotein 70 kDa OS=Dicty... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-004-F01-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735754 ID=EY735754; Name=EY735754; organism=Citrus sinensis; type=EST; length=868bp
CACGCGTCCGCTCGACCCGAACTACAAAACCCGATCCAAATCAACAAATT
CCCAACTCGATGCTATTATCTTCTTAAGAACCCTGGTCACCAAACCCTAG
CTTGTAACCAGAACCCTAGTTGGCACCCGATCTCCTCTGTAAACATGGGA
GACTACAACGATGCATTCATGCGTAACCAAAACGCCGCCGTTCAGGCCCG
TACTAAGGCCCAGAACCGCGCCAACGTCCTTCAGCTTAAGCTGATTGGGC
AAAGCCATCCTACCGGTTTAACAGCCAATCTCTTGAAGCTCTTTGAGCCT
CGAGCTCCGCTTGAGTATAAACCACCTCCAGAGAAAAGAAAATGCCCACC
ACTGACAGGAATGGCGCAGTTTGTTAGTCACTTTGCTGAACCTGGAGATC
CTCTGTATGCTCCACCTGTAGAGAAGGCTGANACTCCTGTAGAAAGAAGG
GCTAGAATCCACAAGTTAAGACTTGAGAAGGGTGCAGAAAAGGCTGCTGA
AGAACTTAAGAAATATGATCCTCATAATGACCCCAATGTGTCAGGAGATC
CATACAACACACTGTTTGTTGCTAGGCTGAGTTATGAAACGACTGAGAGT
AAAATCCAAAGGGAGTTTGAGTCTTATGGGCCAATTAACGGGGTACGTAT
TTTGAGGCACCCCAAGTGGGGTTGGTAGGAGGTGGGGTGCCACTGGAGCC
GGGGGGGTGTCGGGGGAGAAAGATGGAAGTCTTAGTACATTACGTGGGCC
CAGGCGAGGTATACAAGCGCTCTAAGTGAAAAGGTGGCGGCGTTCGGAAC
AAAGACAGTAAGTGTGGCTGACAGACAGAAAGGGGCAGCGGGGGACAGGT
GGGGAGGGGGGCGGGGCG
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