EY735466

Overview
NameEY735466
Unique NameEY735466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1007
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735466 vs. ExPASy Swiss-Prot
Match: PRP8_MOUSE (Pre-mRNA-processing-splicing factor 8 OS=Mus musculus GN=Prpf8 PE=1 SV=2)

HSP 1 Score: 371.703 bits (953), Expect = 3.740e-102
Identity = 173/264 (65.53%), Postives = 210/264 (79.55%), Query Frame = 1
Query:    4 YEQAAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMALSDRFLGFLQGSPTRAQGTILSGELKHTWSLKFGAKLGDPLKKTPRRTIGQFFFWDFTNLEEG 795
            YE   F SKT+WRVRAISA NL+LR NHIYV+S+DIKETGYTYI+PKN+LKKFICI+DLR QI+GYLYG+SPPDNPQVKEIRCI M PQWGTHQ VHLPS LP+H++L ++EPLGW+HTQPNE PQLSPQD+T+HA+I+ +N  WDGEK II+TCSFTPGSC+LTAYKLTPSGYEWGR N D G+NP GYLP+HYE+VQM LSDRFLGF    P ++        ++H  ++K+  +L +P K+          F +F  L+EG
Sbjct: 2062 YETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLPSQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFM-VPAQSSWNYNFMGVRHDPNMKYELQLANP-KEFYHEVHRPSHFLNFALLQEG 2323          
BLAST of EY735466 vs. ExPASy Swiss-Prot
Match: PRP8_HUMAN (Pre-mRNA-processing-splicing factor 8 OS=Homo sapiens GN=PRPF8 PE=1 SV=2)

HSP 1 Score: 370.163 bits (949), Expect = 1.088e-101
Identity = 172/264 (65.15%), Postives = 209/264 (79.17%), Query Frame = 1
Query:    4 YEQAAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMALSDRFLGFLQGSPTRAQGTILSGELKHTWSLKFGAKLGDPLKKTPRRTIGQFFFWDFTNLEEG 795
            YE   F SKT+WRVRAISA NL+LR NHIYV+S+DIKETGYTYI+PKN+LKKFICI+DLR QI+GYLYG+SPPDNPQVKEIRCI M PQWGTHQ VHLP  LP+H++L ++EPLGW+HTQPNE PQLSPQD+T+HA+I+ +N  WDGEK II+TCSFTPGSC+LTAYKLTPSGYEWGR N D G+NP GYLP+HYE+VQM LSDRFLGF    P ++        ++H  ++K+  +L +P K+          F +F  L+EG
Sbjct: 2062 YETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLPGQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFM-VPAQSSWNYNFMGVRHDPNMKYELQLANP-KEFYHEVHRPSHFLNFALLQEG 2323          
BLAST of EY735466 vs. ExPASy Swiss-Prot
Match: PRP8_CAEEL (Pre-mRNA-splicing factor 8 homolog OS=Caenorhabditis elegans GN=prp-8 PE=1 SV=1)

HSP 1 Score: 352.829 bits (904), Expect = 1.798e-96
Identity = 162/243 (66.67%), Postives = 197/243 (81.07%), Query Frame = 1
Query:    4 YEQAAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMALSDRFLGFLQGSPTRAQGTILSGELKHTWS--LKFGAKLGDP 726
            YE A+F S+T+WRVRAIS+TNL+LR  HIYVNS+D+K+TGYTYI+PKNILKKFI I+DLRTQI+G++YG+SPPDNPQVKEIRCI + PQ G+HQQV+LP+ LP+H+ L D EPLGWMHTQPNELPQLSPQD+T+HA++L +N  WDGEK +++TCSFTPGS SLTAYKLTPSGYEWG+ N D G+NP GY+PTHYEKVQM LSDRFLG+              G+    WS  +KF   L +P
Sbjct: 2055 YETASFASRTEWRVRAISSTNLHLRTQHIYVNSDDVKDTGYTYILPKNILKKFITISDLRTQIAGFMYGVSPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQLPDHELLRDFEPLGWMHTQPNELPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSFTPGSVSLTAYKLTPSGYEWGKANTDKGNNPKGYMPTHYEKVQMLLSDRFLGYFMVPSNGVWNYNFQGQ---RWSPAMKFDVCLSNP 2294          
BLAST of EY735466 vs. ExPASy Swiss-Prot
Match: PRP8_DICDI (Pre-mRNA-processing-splicing factor 8 homolog OS=Dictyostelium discoideum GN=prpf8 PE=3 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 5.426e-85
Identity = 155/243 (63.79%), Postives = 184/243 (75.72%), Query Frame = 1
Query:    1 PYEQAAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETG-YTYIMPKNILKKFICIADLRTQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMALSDRFLGFLQGSPTRAQGTILSGELKHTWSLKFGAKLGDP 726
            P+EQ  F SKTDWRVRAISATNL+LR N IYVNS++ KETG +TY+ PKNILKKFI IADLRTQI GY YGISPPDNP VKEIRCI MPPQWGT   V +P+ LPEH++L DLEPLGW+HTQP ELPQLSPQD+ +H++I+ +NK WDGEK +I++ S     C+LTAY LTPSG+EWG+ NKD+  N  GY P  YEKVQM LSDRFLGF    P R         +KH+ ++ +G KL  P
Sbjct: 2050 PHEQKVFSSKTDWRVRAISATNLHLRTNQIYVNSDNAKETGGFTYVFPKNILKKFITIADLRTQIMGYCYGISPPDNPSVKEIRCIVMPPQWGTPVHVTVPNQLPEHEYLKDLEPLGWIHTQPTELPQLSPQDVITHSKIMSDNKSWDGEKTVIISVS-VAWPCTLTAYHLTPSGFEWGKNNKDS-LNYQGYQPQFYEKVQMLLSDRFLGFYM-VPDRGSWNYNFMGVKHSTNMTYGLKLDYP 2289          
BLAST of EY735466 vs. ExPASy Swiss-Prot
Match: SPP42_SCHPO (Pre-mRNA-splicing factor spp42 OS=Schizosaccharomyces pombe GN=spp42 PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 3.541e-60
Identity = 120/215 (55.81%), Postives = 154/215 (71.63%), Query Frame = 1
Query:    4 YEQAAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKET-GYTYIMPKNILKKFICIADLRTQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHD----FLNDLEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPH-GYLPTHYEKVQMALSDRFLGF 630
            YE   F SKT+WR RAIS+ +L LR  +IYVNS++I ET  YTYI+P+N+L+KF+ I+DLRTQ++GY+YG SP DNPQ+KEIRCIA+ PQ G+ + V LPS LP HD     L DLEPLGW+HTQ +ELP LS  D+T+HA+IL ++ +WD  K + LT S+ PGS SL AY ++  G EWG  N D  S+   GY P+  EK Q+ LSDR  GF
Sbjct: 2086 YENEKFSSKTEWRNRAISSISLPLRTKNIYVNSDNISETFPYTYILPQNLLRKFVTISDLRTQVAGYMYGKSPSDNPQIKEIRCIALVPQLGSIRNVQLPSKLP-HDLQPSILEDLEPLGWIHTQSSELPYLSSVDVTTHAKILSSHPEWD-TKAVTLTVSYIPGSISLAAYTVSKEGIEWGSKNMDINSDEAIGYEPSMAEKCQLLLSDRIQGF 2298          
BLAST of EY735466 vs. ExPASy Swiss-Prot
Match: PRP8_YEAST (Pre-mRNA-splicing factor 8 OS=Saccharomyces cerevisiae GN=PRP8 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 5.317e-40
Identity = 88/212 (41.51%), Postives = 131/212 (61.79%), Query Frame = 1
Query:    4 YEQAAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDFLND---LEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKD-TGSNPHGYLPTHYEKVQMALSDRFLG 627
            YE   F SK +WR  AI+ T LYLR+ +IYV+++D  E    Y++PKN+LKKFI I+D++ Q++ ++YG+S  D+P+VKEI+ + + PQ G    V + S +P+   L D   LE LGW+HTQ  EL  ++  ++ +H+++  + K+     CI ++   TPGS SL+AY LT  GY+WG  NKD       G+ PT     Q+ LSDR  G
Sbjct: 2141 YESQTFSSKNEWRKSAIANTLLYLRLKNIYVSADDFVEEQNVYVLPKNLLKKFIEISDVKIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQI-SNIPDIGDLPDTEGLELLGWIHTQTEELKFMAASEVATHSKLFADKKR----DCIDISIFSTPGSVSLSAYNLTDEGYQWGEENKDIMNVLSEGFEPTFSTHAQLLLSDRITG 2347          
The following BLAST results are available for this feature:
BLAST of EY735466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PRP8_MOUSE3.740e-10265.53Pre-mRNA-processing-splicing factor 8 OS=Mus muscu... [more]
PRP8_HUMAN1.088e-10165.15Pre-mRNA-processing-splicing factor 8 OS=Homo sapi... [more]
PRP8_CAEEL1.798e-9666.67Pre-mRNA-splicing factor 8 homolog OS=Caenorhabdit... [more]
PRP8_DICDI5.426e-8563.79Pre-mRNA-processing-splicing factor 8 homolog OS=D... [more]
SPP42_SCHPO3.541e-6055.81Pre-mRNA-splicing factor spp42 OS=Schizosaccharomy... [more]
PRP8_YEAST5.317e-4041.51Pre-mRNA-splicing factor 8 OS=Saccharomyces cerevi... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-109-E08-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735466 ID=EY735466; Name=EY735466; organism=Citrus sinensis; type=EST; length=1007bp
CCTTATGAGCAAGCTGCATTTGGTTCCAAAACAGATTGGCGTGTGAGAGC
AATATCAGCTACCAATCTCTATCTTCGAGTTAATCATATATATGTCAACT
CAGAGGACATAAAGGAGACTGGCTACACTTACATTATGCCAAAGAATATT
TTAAAGAAATTCATCTGCATAGCAGATCTTCGAACTCAAATTTCTGGGTA
CTTATATGGTATAAGCCCGCCAGATAACCCGCAGGTCAAGGAAATTCGTT
GTATTGCCATGCCACCACAATGGGGCACTCATCAGCAAGTTCATCTTCCT
TCGGCACTCCCTGAGCATGATTTCCTGAATGATCTGGAGCCTTTGGGATG
GATGCACACTCAACCAAATGAGCTTCCACAGCTATCGCCTCAGGATCTCA
CTTCTCATGCGCGGATTCTAGAAAACAATAAACAATGGGATGGAGAGAAA
TGCATTATCTTGACTTGTAGTTTCACCCCAGGTTCCTGCTCGTTAACTGC
ATACAAGCTTACTCCAAGTGGTTATGAGTGGGGAAGAGTTAACAAGGACA
CAGGAAGCAATCCCCATGGATATCTTCCAACTCACTATGAGAAGGTCCAA
ATGGCTCTGAGTGACCGGTTCCTTGGGTTTCTACAGGGGTCCCCAACACG
GGCCCAGGGAACTATACTTTCAGGGGAATTGAAGCATACATGGAGCCTGA
AATTTGGGGCCAAGCTTGGGGACCCCCTCAAAAAAACACCCAGAAGAACC
ATAGGCCAATTCTTTTTTTGGGATTTCACCAATTTGGAAGAAGGGGGGAA
ATGGGCAAAGGGAAAATCGGGGGAGGAATAATTTTCCCAAAACACCTATT
GAAGGGTTATGTTTGGGGGGCTGAAACCCTTTCTTTGGGGGGAAATAAAT
TTTGGGAACAATTTTTGGTGTGGGGAAAACGGGCCAAAGAACGGGGGGAA
TAAAATTTTTTTTCTTTTTTCCGCAACAAAGGGGGGGGGGAAGAAGAAAA
ACGACAG
back to top