EY735438

Overview
NameEY735438
Unique NameEY735438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length967
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735438 vs. ExPASy Swiss-Prot
Match: BRE1B_ARATH (E3 ubiquitin-protein ligase BRE1-like 2 OS=Arabidopsis thaliana GN=HUB2 PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 5.906e-41
Identity = 104/207 (50.24%), Postives = 138/207 (66.67%), Query Frame = 2
Query:   11 KIKSLKALIEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETFGQAFLKICRH*TNIWLCKMDEKDELNINLVS*SVKTKTVQSFSTLRKTGTGKATSQNFMLLVEPAKLRFPLTEKRMKA*FEK 631
            +IKSLKALIEKL K+KL+ Q +  +  +E  D R L EIK+S+R+A +QAE LKN LDEH LELRVKAA+E E+ACQ+RL+ A+AEI EL  +LD SER+V+EL+E +K K++EAEA IAEMET GQA+  +     ++ L ++ E+D+ NI LVS SVKTK   +     K    K   Q     VE  K R    E++MK  F +
Sbjct:  538 EIKSLKALIEKLLKEKLQLQNLASICTRECNDDRGLAEIKDSQRKAQAQAEELKNVLDEHFLELRVKAAHETESACQERLATAKAEIAELRTQLDLSEREVLELKEGIKVKEQEAEASIAEMETIGQAYEDMQTQNQHL-LQQVAERDDYNIKLVSESVKTKHAYNTHLSEKQVMEKQLHQ-VNASVENFKARIAHNEEQMKGCFSE 742          
BLAST of EY735438 vs. ExPASy Swiss-Prot
Match: BRE1B_ORYSJ (E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp. japonica GN=BRE1B PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.931e-40
Identity = 97/202 (48.02%), Postives = 139/202 (68.81%), Query Frame = 2
Query:   11 KIKSLKALIEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETFGQAFLKICRH*TNIWLCKMDEKDELNINLVS*SVKTKTVQSFSTLRKTGTGKATSQNFMLLVEPAKLRFPLTEKRMK 616
            +IKSLKALIE L ++K E Q ++DM G+E  + R + EI+ESE RA  QAE L+  L+EH+LELRVKAANEAE ACQQRLS AEAE+ +L AK+DASERDVM+L+E+++ K+ E + +I+E+ET GQA+  +     ++ L ++ ++D+ NI LVS SVK K     S L +    +   Q+    +E +KL+    E++MK
Sbjct:  482 EIKSLKALIETLDQEKQELQFIVDMLGKECSESRAISEIEESENRARKQAEYLRKCLEEHNLELRVKAANEAETACQQRLSIAEAELEDLRAKVDASERDVMKLKESIRIKEAEVDGHISEIETIGQAYEDMQTQNQHL-LQQVADRDDFNIKLVSDSVKMKQAYG-SLLAEKNMLQKQLQHVNSSLESSKLKITSGEEQMK 681          
BLAST of EY735438 vs. ExPASy Swiss-Prot
Match: BRE1B_ORYSI (E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp. indica GN=BRE1B PE=3 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 2.931e-40
Identity = 97/202 (48.02%), Postives = 139/202 (68.81%), Query Frame = 2
Query:   11 KIKSLKALIEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETFGQAFLKICRH*TNIWLCKMDEKDELNINLVS*SVKTKTVQSFSTLRKTGTGKATSQNFMLLVEPAKLRFPLTEKRMK 616
            +IKSLKALIE L ++K E Q ++DM G+E  + R + EI+ESE RA  QAE L+  L+EH+LELRVKAANEAE ACQQRLS AEAE+ +L AK+DASERDVM+L+E+++ K+ E + +I+E+ET GQA+  +     ++ L ++ ++D+ NI LVS SVK K     S L +    +   Q+    +E +KL+    E++MK
Sbjct:  482 EIKSLKALIETLDQEKQELQFIVDMLGKECSESRAISEIEESENRARKQAEYLRKCLEEHNLELRVKAANEAETACQQRLSIAEAELEDLRAKVDASERDVMKLKESIRIKEAEVDGHISEIETIGQAYEDMQTQNQHL-LQQVADRDDFNIKLVSDSVKMKQAYG-SLLAEKNMLQKQLQHVNSSLESSKLKITSGEEQMK 681          
BLAST of EY735438 vs. ExPASy Swiss-Prot
Match: BRE1A_ARATH (E3 ubiquitin-protein ligase BRE1-like 1 OS=Arabidopsis thaliana GN=HUB1 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.409e-26
Identity = 68/165 (41.21%), Postives = 102/165 (61.82%), Query Frame = 2
Query:   11 KIKSLKALIEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETFGQAFLKICRH*TNIWLCKMDEKDELNINLVS*SVKTKTVQ 505
            ++  L A +  L+    E ++ LDMY +E  D RD+ E KE E RA +  + LK++LDE +LELRVKAANEAEA  QQ L+AAEAEI +L  K+D  +RDV +  + +KSK  E   Y++E++T G A+  I      + L ++ E+D+ NI L    + ++ +Q
Sbjct:  515 QLGDLNATVCDLKNSHEELKLFLDMYKRESTDARDIAEAKEQEYRAWAHVQSLKSSLDEQNLELRVKAANEAEAVSQQMLAAAEAEIADLRQKMDDCKRDVAKHSDILKSKHEEHGTYLSEIQTIGSAYEDIVPQNQQL-LLQVTERDDYNIKLFLEGITSRQMQ 678          
BLAST of EY735438 vs. ExPASy Swiss-Prot
Match: BRE1A_ORYSJ (E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza sativa subsp. japonica GN=BRE1A PE=2 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 5.023e-24
Identity = 67/164 (40.85%), Postives = 95/164 (57.93%), Query Frame = 2
Query:   14 IKSLKALIEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETFGQAFLKICRH*TNIWLCKMDEKDELNINLVS*SVKTKTVQ 505
            I  L+++I  L++   E ++  DMY +E  D R++ME ++ E    +    LK++LDE  LE RVKAANEAEA  QQRL+ AEAEI E   KL  S +D++ L   +KSK  E EAY  E+E  GQA+  I      + L ++ E+D+ N  +    VK K  Q
Sbjct:  522 ITQLQSVISDLKQTNKELKLFADMYKRESTDSREIMESRDREFLEWAHVHALKSSLDESKLEQRVKAANEAEAITQQRLATAEAEIAESGQKLGTSRKDLVSLSHMLKSKQEECEAYRVEVECIGQAYEDIQAQNQQL-LQQIIERDDDNTKIFMEGVKAKQTQ 684          
BLAST of EY735438 vs. ExPASy Swiss-Prot
Match: BRE1A_ORYSI (E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza sativa subsp. indica GN=BRE1A PE=3 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 5.023e-24
Identity = 67/164 (40.85%), Postives = 95/164 (57.93%), Query Frame = 2
Query:   14 IKSLKALIEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETFGQAFLKICRH*TNIWLCKMDEKDELNINLVS*SVKTKTVQ 505
            I  L+++I  L++   E ++  DMY +E  D R++ME ++ E    +    LK++LDE  LE RVKAANEAEA  QQRL+ AEAEI E   KL  S +D++ L   +KSK  E EAY  E+E  GQA+  I      + L ++ E+D+ N  +    VK K  Q
Sbjct:  522 ITQLQSVISDLKQTNKELKLFADMYKRESTDSREIMESRDREFLEWAHVHALKSSLDESKLEQRVKAANEAEAITQQRLATAEAEIAESGQKLGTSRKDLVSLSHMLKSKQEECEAYRVEVECIGQAYEDIQAQNQQL-LQQIIERDDDNTKIFMEGVKAKQTQ 684          
The following BLAST results are available for this feature:
BLAST of EY735438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
BRE1B_ARATH5.906e-4150.24E3 ubiquitin-protein ligase BRE1-like 2 OS=Arabido... [more]
BRE1B_ORYSJ2.931e-4048.02E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza s... [more]
BRE1B_ORYSI2.931e-4048.02E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza s... [more]
BRE1A_ARATH2.409e-2641.21E3 ubiquitin-protein ligase BRE1-like 1 OS=Arabido... [more]
BRE1A_ORYSJ5.023e-2440.85E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza s... [more]
BRE1A_ORYSI5.023e-2440.85E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza s... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-109-A04-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735438 ID=EY735438; Name=EY735438; organism=Citrus sinensis; type=EST; length=967bp
CAGATGGCAGAAAATCAAATCCCTGAAGGCCCTAATTGAAAAGTTGCAAA
AGGACAAACTGGAATCGCAGATTATGTTGGACATGTATGGCCAGGAAGGT
CGTGATCCCAGGGATTTGATGGAGATAAAAGAATCAGAACGTAGAGCTCA
TTCACAAGCTGAAGTCCTGAAAAATGCCCTGGATGAACATAGTCTAGAGT
TGAGGGTGAAAGCTGCTAATGAGGCTGAAGCTGCTTGCCAGCAAAGGCTT
TCTGCTGCAGAAGCTGAAATAATTGAACTGGTGGCCAAACTGGATGCTTC
TGAGAGGGATGTGATGGAGCTCGAAGAGGCTATGAAAAGCAAAGATCGAG
AAGCGGAAGCATACATTGCTGAAATGGAGACCTTTGGTCAAGCATTTCTA
AAGATTTGCAGACACTAAACCAACATTTGGCTCTGCAAGATGGATGAAAA
GGATGAACTAAATATTAACCTTGTCTCGTAAAGTGTGAAGACTAAAACTG
TGCAAAGCTTTTCTACTCTCCGAAAAACAGGCACTGGTAAGGCAACTTCA
CAAAATTTCATGCTTTTGGTGGAACCAGCAAAATTGAGATTTCCCCTGAC
TGAAAAACGAATGAAAGCCTAGTTTGAAAAAAGGCTCTTTATTTTAAACA
CCTGAAGGACGGATGTGCCTTGGTAAATCGGCCTTGGTAACCAACAAGGT
GGGGAAATTCCAAAATGCGATGAGCACTATTTGAATTCGGGCTTAAACAC
TCCCACTTTTCTTTCCCTTCGTATAAAGGGAAGTCTGAGCCCGACTCCCT
CGGGGATACGAAGGAAAAGTAAGTCGGGGAAATGAATTGTGGGCGTAGTA
AGTAAAAATAACGTAAGTATAAAGAAAAAAATATTTATATAGGGGAAGAG
AAGCTCTACTCGGAGAAAAAATGTAGTTAGGATATAAAAAGCAGATGGTT
TTCATATCAAATCATAA
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