EY735002

Overview
NameEY735002
Unique NameEY735002
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY735002_ssr83 microsatellite EY735002_ssr83:83..94. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY735002 vs. ExPASy Swiss-Prot
Match: FDFT_NICBE (Squalene synthetase OS=Nicotiana benthamiana PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 9.981e-61
Identity = 111/134 (82.84%), Postives = 123/134 (91.79%), Query Frame = 3
Query:  126 MGSLAAVLRHPDDLYPLLKLKMASRQAEKQIPPEPHWAFCYSMLHKVSRSFALDIQQLGTDLRNAVCIFYLGLRALYTVEDDTSIPTDVKVPILITFHRHVYDREWHLSCGTKEYKVLMDQFHHVSTAFLELGK 527
            MGSL A+L++P+DLYPL+KLK+A+R AEKQIPP P+W FCYSMLHKVSRSFAL IQQL  +LR+AVCIFYL LRAL TVEDDTSIPTDVKVPILI+FH+HVYDREWH SCGTKEYKVLMDQFHHVSTAFLEL K
Sbjct:    1 MGSLRAILKNPEDLYPLVKLKLAARHAEKQIPPSPNWGFCYSMLHKVSRSFALVIQQLPVELRDAVCIFYLVLRALDTVEDDTSIPTDVKVPILISFHQHVYDREWHFSCGTKEYKVLMDQFHHVSTAFLELRK 134          
BLAST of EY735002 vs. ExPASy Swiss-Prot
Match: FDFT_ARATH (Squalene synthetase OS=Arabidopsis thaliana GN=SQS1 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 9.981e-61
Identity = 108/136 (79.41%), Postives = 120/136 (88.24%), Query Frame = 3
Query:  126 MGSLAAVLRHPDDLYPLLKLKMASRQAEKQIPPEPHWAFCYSMLHKVSRSFALDIQQLGTDLRNAVCIFYLGLRALYTVEDDTSIPTDVKVPILITFHRHVYDREWHLSCGTKEYKVLMDQFHHVSTAFLELGKGW 533
            MGSL  +LR+PDD+YPLLK+K A  +AEKQIPPEPHW FCYSMLHKVSRSF+L IQQL T+LRNAVC+FYL LRAL TVEDDTSIPTD KVPILI FHRH+YD +WH SCGTKEYK+LMDQFHHVS AFLEL KG+
Sbjct:    1 MGSLGTMLRYPDDIYPLLKMKRAIEKAEKQIPPEPHWGFCYSMLHKVSRSFSLVIQQLNTELRNAVCVFYLVLRALDTVEDDTSIPTDEKVPILIAFHRHIYDTDWHYSCGTKEYKILMDQFHHVSAAFLELEKGY 136          
BLAST of EY735002 vs. ExPASy Swiss-Prot
Match: FDFT_MOUSE (Squalene synthetase OS=Mus musculus GN=Fdft1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.904e-19
Identity = 51/131 (38.93%), Postives = 75/131 (57.25%), Query Frame = 3
Query:  147 LRHPDDLYPLLKLKMASRQ----AEKQIPPEPHWAFCYSMLHKVSRSFALDIQQLGTDLRNAVCIFYLGLRALYTVEDDTSIPTDVKVPILITFHRHVYDREWHLSCGTKEYKVLMDQFHHVSTAFLELGK 527
            L HP++ Y LL+ +M  R+       Q         CY  L++ SRSFA  IQ L  D+R+A+C+FYL LRAL TVEDD SI  + K+P+L  FH  +YD EW  +   ++ + +++ F  +S  F  L +
Sbjct:    7 LGHPEEFYNLLRFRMGGRRNFIPKMDQDSLSSSLKTCYKYLNQTSRSFAAVIQALDGDIRHAICVFYLVLRALDTVEDDMSISVEKKIPLLCNFHTFLYDPEWRFTESKEKDRQVLEDFPTISLEFRNLAE 137          
BLAST of EY735002 vs. ExPASy Swiss-Prot
Match: FDFT_RAT (Squalene synthetase OS=Rattus norvegicus GN=Fdft1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.242e-19
Identity = 51/133 (38.35%), Postives = 78/133 (58.65%), Query Frame = 3
Query:  147 LRHPDDLYPLLKLKMASRQAEKQIPPEPHWAF------CYSMLHKVSRSFALDIQQLGTDLRNAVCIFYLGLRALYTVEDDTSIPTDVKVPILITFHRHVYDREWHLSCGTKEYKVLMDQFHHVSTAFLELGK 527
            L HP++ Y LL+ +M  R+    IP     +       CY  L + SRSFA  IQ L  D+R+AVC+FYL LRA+ TVEDD +I  + K+P+L  FH  +Y+ EW  +   ++++V+++ F  +S  F  L +
Sbjct:    7 LGHPEEFYNLLRFRMGGRR--NFIPKMDRNSLSNSLKTCYKYLDQTSRSFAAVIQALDGDIRHAVCVFYLILRAMDTVEDDMAISVEKKIPLLRNFHTFLYEPEWRFTESKEKHRVVLEDFPTISLEFRNLAE 137          
BLAST of EY735002 vs. ExPASy Swiss-Prot
Match: FDFT_BOVIN (Squalene synthetase OS=Bos taurus GN=FDFT1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.591e-18
Identity = 51/133 (38.35%), Postives = 79/133 (59.40%), Query Frame = 3
Query:  147 LRHPDDLYPLLKLKMASRQAEKQIPPEPHWAF------CYSMLHKVSRSFALDIQQLGTDLRNAVCIFYLGLRALYTVEDDTSIPTDVKVPILITFHRHVYDREWHLSCGTKEYKVLMDQFHHVSTAFLELGK 527
            L HP++ Y LL+ +M  R+  K IP     +       CY  L++ SRSFA  IQ L  ++R+AVCIFYL LRAL T+EDD +I  + KVP+L  FH ++Y+ +W  +   ++ + +++ F  +S  F  L +
Sbjct:    7 LGHPEEFYNLLRFQMGGRR--KVIPKMDQDSLSSSLKTCYKYLNQTSRSFAAVIQALDGEMRHAVCIFYLVLRALDTLEDDMTISIERKVPLLHNFHSYLYEPDWRFTESKEKDRQVLEDFPTISLEFRNLAE 137          
BLAST of EY735002 vs. ExPASy Swiss-Prot
Match: FDFT_PONAB (Squalene synthetase OS=Pongo abelii GN=FDFT1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.845e-17
Identity = 48/133 (36.09%), Postives = 76/133 (57.14%), Query Frame = 3
Query:  147 LRHPDDLYPLLKLKMASRQAEKQIPPEPHWAF------CYSMLHKVSRSFALDIQQLGTDLRNAVCIFYLGLRALYTVEDDTSIPTDVKVPILITFHRHVYDREWHLSCGTKEYKVLMDQFHHVSTAFLELGK 527
            L HP++ Y L++ ++  ++  K +P     +       CY  L++ SRSFA  IQ L  ++RNAVCIFYL LRAL T+EDD +I  + KVP+L  FH  +Y  +W      ++ + +++ F  +S  F  L +
Sbjct:    7 LGHPEEFYNLVRFRIGGKR--KVMPKMDQDSLSSSLKTCYKYLNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFMESKEKDRQVLEDFPTISLEFRNLAE 137          
BLAST of EY735002 vs. ExPASy Swiss-Prot
Match: FDFT_HUMAN (Squalene synthetase OS=Homo sapiens GN=FDFT1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.845e-17
Identity = 48/133 (36.09%), Postives = 76/133 (57.14%), Query Frame = 3
Query:  147 LRHPDDLYPLLKLKMASRQAEKQIPPEPHWAF------CYSMLHKVSRSFALDIQQLGTDLRNAVCIFYLGLRALYTVEDDTSIPTDVKVPILITFHRHVYDREWHLSCGTKEYKVLMDQFHHVSTAFLELGK 527
            L HP++ Y L++ ++  ++  K +P     +       CY  L++ SRSFA  IQ L  ++RNAVCIFYL LRAL T+EDD +I  + KVP+L  FH  +Y  +W      ++ + +++ F  +S  F  L +
Sbjct:    7 LGHPEEFYNLVRFRIGGKR--KVMPKMDQDSLSSSLKTCYKYLNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFMESKEKDRQVLEDFPTISLEFRNLAE 137          
BLAST of EY735002 vs. ExPASy Swiss-Prot
Match: FDFT_DICDI (Squalene synthetase OS=Dictyostelium discoideum GN=fdfT PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.845e-15
Identity = 50/133 (37.59%), Postives = 74/133 (55.64%), Query Frame = 3
Query:  147 LRHPDDLYPLLKLKMASRQAEKQIPPEP--HWAFCYSMLHKVSRSFALDIQQLGTDLRNAVCIFYLGLRALYTVEDDTSIPTDVKVPILITFHRHVYDREWHL-SCG-TKEYKVLMDQFHHVSTAFLELGKGW 533
            L HPD+   LLK+        K    E   +  +CY +L+K SRSFA  I +L   L++A+CIFYL LR L T+EDDT++  + K+P+L +F   +Y   + +   G   + K L++ F  V   FL LG G+
Sbjct:    7 LAHPDEFLSLLKIGYTESFKPKSQLKENLGNKEWCYELLNKTSRSFAFVINELEPSLKDAICIFYLVLRGLDTIEDDTTVELNTKLPVLTSFSEGLYQPGYKVFGYGMNNDEKNLVENFDKVVDVFLGLGDGY 139          
BLAST of EY735002 vs. ExPASy Swiss-Prot
Match: FDFT_PICJA (Squalene synthetase OS=Pichia jadinii GN=ERG9 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.854e-15
Identity = 47/145 (32.41%), Postives = 75/145 (51.72%), Query Frame = 3
Query:  126 MGSLAAVLRHPDDLYPLLKLKMASRQAEKQIPPEPHWAF--CYSMLHKVSRSFALDIQQLGTDLRNAVCIFYLGLRALYTVEDDTSIPTDVKVPILITFHRHVYDREWHLS---------CGTKEYKVLMDQFHHVSTAFLELGK 527
            MG L  +  HPD+L  +++ K+  +    + P         CY +L+  SRSFA  I++L  +LRN + +FYL LRAL TVE D SI   VK+P+L  FH  +  ++W            C   E+  ++ Q+H +   + ++ K
Sbjct:    1 MGKLLQLALHPDELASIVQFKLFRKNENARNPATESAELIRCYELLNLTSRSFAAVIEELHPELRNVIMVFYLVLRALDTVEVDMSIENSVKLPVLRQFHEKLDTKDWTFDGNSPNEKDRCVLVEFDRILGQYHELKPQYQKVIK 145          
BLAST of EY735002 vs. ExPASy Swiss-Prot
Match: FDFT_YEAST (Squalene synthetase OS=Saccharomyces cerevisiae GN=ERG9 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.933e-13
Identity = 50/145 (34.48%), Postives = 72/145 (49.66%), Query Frame = 3
Query:  126 MGSLAAVLRHPDDLYPLLKLKMASRQAEK--QIPPEPHWAFCYSMLHKVSRSFALDIQQLGTDLRNAVCIFYLGLRALYTVEDDTSIPTDVKVPILITFHRHVYDREWHLSCGTKEYK---VLMD------QFHHVSTAFLELGK 527
            MG L  +  HP ++   LKLK               P+   C+ +L+  SRSFA  I++L  +LRN V +FYL LRAL T+EDD SI  D+K+ +L  FH  +   +W       + K   VL D      +FH +   + E+ K
Sbjct:    1 MGKLLQLALHPVEMKAALKLKFCRTPLFSIYDQSTSPYLLHCFELLNLTSRSFAAVIRELHPELRNCVTLFYLILRALDTIEDDMSIEHDLKIDLLRHFHEKLLLTKWSFDGNAPDVKDRAVLTDFESILIEFHKLKPEYQEVIK 145          
The following BLAST results are available for this feature:
BLAST of EY735002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
FDFT_NICBE9.981e-6182.84Squalene synthetase OS=Nicotiana benthamiana PE=2 ... [more]
FDFT_ARATH9.981e-6179.41Squalene synthetase OS=Arabidopsis thaliana GN=SQS... [more]
FDFT_MOUSE1.904e-1938.93Squalene synthetase OS=Mus musculus GN=Fdft1 PE=2 ... [more]
FDFT_RAT4.242e-1938.35Squalene synthetase OS=Rattus norvegicus GN=Fdft1 ... [more]
FDFT_BOVIN3.591e-1838.35Squalene synthetase OS=Bos taurus GN=FDFT1 PE=2 SV... [more]
FDFT_PONAB8.845e-1736.09Squalene synthetase OS=Pongo abelii GN=FDFT1 PE=2 ... [more]
FDFT_HUMAN8.845e-1736.09Squalene synthetase OS=Homo sapiens GN=FDFT1 PE=1 ... [more]
FDFT_DICDI2.845e-1537.59Squalene synthetase OS=Dictyostelium discoideum GN... [more]
FDFT_PICJA4.854e-1532.41Squalene synthetase OS=Pichia jadinii GN=ERG9 PE=3... [more]
FDFT_YEAST5.933e-1334.48Squalene synthetase OS=Saccharomyces cerevisiae GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-075-B11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735002 ID=EY735002; Name=EY735002; organism=Citrus sinensis; type=EST; length=885bp
TTCTCGACCCACGCGTCCGAATAGACCCATTACCTAACAAAATTTAACGC
CTCCTACAAATACCCTTTCGAAGATTTTATTTTTGTTGTTGTTGCTTTCT
AGGTTTACAAAAAAAAAATAATAAAATGGGGAGTTTGGCAGCGGTGTTGA
GGCACCCAGATGATCTTTACCCGTTATTGAAGCTGAAAATGGCATCGAGG
CAAGCTGAAAAGCAGATCCCACCTGAGCCTCACTGGGCTTTTTGTTACTC
TATGCTTCATAAGGTCTCCAGAAGTTTCGCTCTCGATATTCAACAGCTCG
GTACTGACCTCAGAAACGCCGTTTGCATATTTTATTTGGGTCTTCGAGCC
CTCTACACTGTTGAGGATGACACCAGCATACCTACAGATGTCAAAGTGCC
TATTCTGATAACTTTTCATCGTCATGTTTATGACCGTGAATGGCATTTAT
CTTGTGGTACAAAGGAATACAAAGTGCTCATGGATCAATTTCATCACGTT
TCAACTGCTTTTCTGGAGCTTGGAAAAGGTTGGATAAATACCTAATCCTT
GGATCAGGGTGATGGCGGGTTTTCAATTGAGTGCTGGTTCTGGTTCATGG
TTGGCTACCTAAAAGGGGAGTTCCTTTGCTTGATACGTTGATGAAATTAT
GAATCTGGCTCATAATTTTAGTTCAAGCTGAAAATTTGAAGAATTAGTGA
TAGATGACAAGAGTAATATAAAGCTGAATTTTATTTTGGCGTTACCATAT
AAATTTCTTTGGGCAATAACTACATCTAACNACTTGCTGGGTTTACTTGC
TTAAAACGACATAATCCTTGCAGTTTTACTTTTTACATCAACTAAAGTTA
CCCTTTTATTCCGTGCGGCAGGTATTCAGATTGCA
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