EY734952

Overview
NameEY734952
Unique NameEY734952
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12266 contig Csv1_Contig12266:1..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY734952 vs. ExPASy Swiss-Prot
Match: PRP8_MOUSE (Pre-mRNA-processing-splicing factor 8 OS=Mus musculus GN=Prpf8 PE=1 SV=2)

HSP 1 Score: 446.047 bits (1146), Expect = 1.251e-124
Identity = 196/269 (72.86%), Postives = 234/269 (86.99%), Query Frame = 3
Query:   33 FGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRATHFLEFSTLEEGEMAXGDREDTFS 839
            F SKT+WRVRAISA NL+LR NHIYV+S+DIKETGYTYI+PKN+LKKFICI+DLR QI+GYLYG+SPPDNPQVKEIRCI M PQWGTHQ VHLPS LP+H++L ++EPLGW+HTQPNE PQLSPQD+T+HA+I+ +N  WDGEK II+TCSFTPGSC+LTAYKLTPSGYEWGR N D G+NP GYLP+HYE+VQMLLSDRFLGF+MVP    WNYNFMGV+H  +MKY ++L  P+E+YHE HR +HFL F+ L+EGE+   DRED ++
Sbjct: 2067 FSSKTEWRVRAISAANLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLPSQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA 2335          
BLAST of EY734952 vs. ExPASy Swiss-Prot
Match: PRP8_HUMAN (Pre-mRNA-processing-splicing factor 8 OS=Homo sapiens GN=PRPF8 PE=1 SV=2)

HSP 1 Score: 444.506 bits (1142), Expect = 3.639e-124
Identity = 195/269 (72.49%), Postives = 233/269 (86.62%), Query Frame = 3
Query:   33 FGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRATHFLEFSTLEEGEMAXGDREDTFS 839
            F SKT+WRVRAISA NL+LR NHIYV+S+DIKETGYTYI+PKN+LKKFICI+DLR QI+GYLYG+SPPDNPQVKEIRCI M PQWGTHQ VHLP  LP+H++L ++EPLGW+HTQPNE PQLSPQD+T+HA+I+ +N  WDGEK II+TCSFTPGSC+LTAYKLTPSGYEWGR N D G+NP GYLP+HYE+VQMLLSDRFLGF+MVP    WNYNFMGV+H  +MKY ++L  P+E+YHE HR +HFL F+ L+EGE+   DRED ++
Sbjct: 2067 FSSKTEWRVRAISAANLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLPGQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA 2335          
BLAST of EY734952 vs. ExPASy Swiss-Prot
Match: PRP8_CAEEL (Pre-mRNA-splicing factor 8 homolog OS=Caenorhabditis elegans GN=prp-8 PE=1 SV=1)

HSP 1 Score: 417.927 bits (1073), Expect = 3.648e-116
Identity = 186/272 (68.38%), Postives = 227/272 (83.46%), Query Frame = 3
Query:   27 AAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRATHFLEFSTLEEG-EMAXGDREDTFS 839
            A+F S+T+WRVRAIS+TNL+LR  HIYVNS+D+K+TGYTYI+PKNILKKFI I+DLRTQI+G++YG+SPPDNPQVKEIRCI + PQ G+HQQV+LP+ LP+H+ L D EPLGWMHTQPNELPQLSPQD+T+HA++L +N  WDGEK +++TCSFTPGS SLTAYKLTPSGYEWG+ N D G+NP GY+PTHYEKVQMLLSDRFLG++MVP NG WNYNF G + + +MK+ V L  P+EYYHEDHR  HF  F   ++       DRED F+
Sbjct: 2058 ASFASRTEWRVRAISSTNLHLRTQHIYVNSDDVKDTGYTYILPKNILKKFITISDLRTQIAGFMYGVSPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQLPDHELLRDFEPLGWMHTQPNELPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSFTPGSVSLTAYKLTPSGYEWGKANTDKGNNPKGYMPTHYEKVQMLLSDRFLGYFMVPSNGVWNYNFQGQRWSPAMKFDVCLSNPKEYYHEDHRPVHFHNFKAFDDPLGTGSADREDAFA 2329          
BLAST of EY734952 vs. ExPASy Swiss-Prot
Match: PRP8_DICDI (Pre-mRNA-processing-splicing factor 8 homolog OS=Dictyostelium discoideum GN=prpf8 PE=3 SV=1)

HSP 1 Score: 371.318 bits (952), Expect = 3.915e-102
Identity = 174/258 (67.44%), Postives = 205/258 (79.46%), Query Frame = 3
Query:   24 QAAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETG-YTYIMPKNILKKFICIADLRTQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRATHFLEFSTL 794
            Q  F SKTDWRVRAISATNL+LR N IYVNS++ KETG +TY+ PKNILKKFI IADLRTQI GY YGISPPDNP VKEIRCI MPPQWGT   V +P+ LPEH++L DLEPLGW+HTQP ELPQLSPQD+ +H++I+ +NK WDGEK +I++ S     C+LTAY LTPSG+EWG+ NKD+  N  GY P  YEKVQMLLSDRFLGFYMVPD G WNYNFMGVKH+ +M YG+KL  P+ +Y E HR  HF  ++ +
Sbjct: 2053 QKVFSSKTDWRVRAISATNLHLRTNQIYVNSDNAKETGGFTYVFPKNILKKFITIADLRTQIMGYCYGISPPDNPSVKEIRCIVMPPQWGTPVHVTVPNQLPEHEYLKDLEPLGWIHTQPTELPQLSPQDVITHSKIMSDNKSWDGEKTVIISVS-VAWPCTLTAYHLTPSGFEWGKNNKDS-LNYQGYQPQFYEKVQMLLSDRFLGFYMVPDRGSWNYNFMGVKHSTNMTYGLKLDYPKNFYDESHRPAHFQNWTQM 2308          
BLAST of EY734952 vs. ExPASy Swiss-Prot
Match: SPP42_SCHPO (Pre-mRNA-splicing factor spp42 OS=Schizosaccharomyces pombe GN=spp42 PE=1 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 1.074e-75
Identity = 142/275 (51.64%), Postives = 189/275 (68.73%), Query Frame = 3
Query:   33 FGSKTDWRVRAISATNLYLRVNHIYVNSEDIKET-GYTYIMPKNILKKFICIADLRTQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHD----FLNDLEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPH-GYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRATHFLEFSTLEEGEMAXGDREDTFS 839
            F SKT+WR RAIS+ +L LR  +IYVNS++I ET  YTYI+P+N+L+KF+ I+DLRTQ++GY+YG SP DNPQ+KEIRCIA+ PQ G+ + V LPS LP HD     L DLEPLGW+HTQ +ELP LS  D+T+HA+IL ++ +WD  K + LT S+ PGS SL AY ++  G EWG  N D  S+   GY P+  EK Q+LLSDR  GF++VP+ G WNYNF G   +  M Y +KL  P  ++  +HR TH + ++ LE  +    D  D F+
Sbjct: 2091 FSSKTEWRNRAISSISLPLRTKNIYVNSDNISETFPYTYILPQNLLRKFVTISDLRTQVAGYMYGKSPSDNPQIKEIRCIALVPQLGSIRNVQLPSKLP-HDLQPSILEDLEPLGWIHTQSSELPYLSSVDVTTHAKILSSHPEWD-TKAVTLTVSYIPGSISLAAYTVSKEGIEWGSKNMDINSDEAIGYEPSMAEKCQLLLSDRIQGFFLVPEEGVWNYNFNGASFSPKMTYSLKLDVPLPFFALEHRPTHVISYTELETNDRLEEDMPDAFA 2363          
BLAST of EY734952 vs. ExPASy Swiss-Prot
Match: PRP8_YEAST (Pre-mRNA-splicing factor 8 OS=Saccharomyces cerevisiae GN=PRP8 PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.105e-55
Identity = 113/273 (41.39%), Postives = 164/273 (60.07%), Query Frame = 3
Query:   33 FGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDFLND---LEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKD-TGSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRATHFLEFSTLEEGEMAXGDREDTFS 839
            F SK +WR  AI+ T LYLR+ +IYV+++D  E    Y++PKN+LKKFI I+D++ Q++ ++YG+S  D+P+VKEI+ + + PQ G    V + S +P+   L D   LE LGW+HTQ  EL  ++  ++ +H+++  + K+     CI ++   TPGS SL+AY LT  GY+WG  NKD       G+ PT     Q+LLSDR  G +++P    WNY FMG        Y  K G P E+Y+E HR  HFL+FS L   E    ++ D FS
Sbjct: 2146 FSSKNEWRKSAIANTLLYLRLKNIYVSADDFVEEQNVYVLPKNLLKKFIEISDVKIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQI-SNIPDIGDLPDTEGLELLGWIHTQTEELKFMAASEVATHSKLFADKKR----DCIDISIFSTPGSVSLSAYNLTDEGYQWGEENKDIMNVLSEGFEPTFSTHAQLLLSDRITGNFIIPSGNVWNYTFMGTAFNQEGDYNFKYGIPLEFYNEMHRPVHFLQFSELAGDEELEAEQIDVFS 2413          
The following BLAST results are available for this feature:
BLAST of EY734952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PRP8_MOUSE1.251e-12472.86Pre-mRNA-processing-splicing factor 8 OS=Mus muscu... [more]
PRP8_HUMAN3.639e-12472.49Pre-mRNA-processing-splicing factor 8 OS=Homo sapi... [more]
PRP8_CAEEL3.648e-11668.38Pre-mRNA-splicing factor 8 homolog OS=Caenorhabdit... [more]
PRP8_DICDI3.915e-10267.44Pre-mRNA-processing-splicing factor 8 homolog OS=D... [more]
SPP42_SCHPO1.074e-7551.64Pre-mRNA-splicing factor spp42 OS=Schizosaccharomy... [more]
PRP8_YEAST2.105e-5541.39Pre-mRNA-splicing factor 8 OS=Saccharomyces cerevi... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-108-D11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY734952 ID=EY734952; Name=EY734952; organism=Citrus sinensis; type=EST; length=873bp
CCACGCGTCCGGTCCTTATGTAGCAAGCTGCATTTGGTTCCAAAACAGAT
TGGCGTGTGAGAGCAATATCAGCTACCAATCTCTATCTTCGAGTTAATCA
TATATATGTCAACTCAGAGGACATAAAGGAGACTGGCTACACTTACATTA
TGCCAAAGAATATTTTAAAGAAATTCATCTGCATAGCAGATCTTCGAACT
CAAATTTCTGGGTACTTATATGGTATAAGCCCGCCAGATAACCCGCAGGT
CAAGGAAATTCGTTGTATTGCCATGCCACCACAATGGGGCACTCATCAGC
AAGTTCATCTTCCTTCGGCACTCCCTGAGCATGATTTCCTGAATGATCTG
GAGCCTTTGGGATGGATGCACACTCAACCAAATGAGCTTCCACAGCTATC
GCCTCAGGATCTCACTTCTCATGCGCGGATTCTAGAAAACAATAAACAAT
GGGATGGAGAGAAATGCATTATCTTGACTTGTAGTTTCACCCCAGGTTCC
TGCTCGTTAACTGCATACAAGCTTACTCCAAGTGGTTATGAGTGGGGAAG
AGTTAACAAGGACACAGGAAGCAATCCCCATGGATATCTTCCAACTCACT
ATGAGAAGGTCCAAATGCTTCTGAGTGACCGGTTCCTTGGTTTCTACATG
GTTCCCGACAACGGTCCATGGAACTATAACTTCATGGGAGTGAAGCATAC
AGTGAGCATGAAATATGGTGTCAAGCTTGGGACTCCTCGAGAATACTACC
ATGAGGACCATAGGGCAACTCATTTCTTGGAGTTCAGCACCTTGGAGGAG
GGTGAAATGGCANANGGAGATCGTGAGGATACATTCTCATAAGCCTATTG
ATGCTATTTTGAGGCCGTATCTT
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