EY756417

Overview
NameEY756417
Unique NameEY756417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5044 contig Csv1_Contig5044:1392..1881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGS2_VICFA (Glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic OS=Vicia faba GN=AGPP PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.240e-33
Identity = 69/77 (89.61%), Postives = 76/77 (98.70%), Query Frame = 3
Query:   12 DADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            DADRRFLAAKG VPIGIGKNSHI+RAIIDKNARIGD+VKI+NSD+VQEAARET+GYFIKSGIVT+IKDALIPSGT+I
Sbjct:  436 DADRRFLAAKGGVPIGIGKNSHIRRAIIDKNARIGDDVKIINSDNVQEAARETEGYFIKSGIVTVIKDALIPSGTVI 512          
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGS1_VICFA (Glucose-1-phosphate adenylyltransferase small subunit 1, chloroplastic OS=Vicia faba GN=AGPC PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.619e-33
Identity = 68/77 (88.31%), Postives = 77/77 (100.00%), Query Frame = 3
Query:   12 DADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            +AD+RFLAAKGSVPIGIGKNSHIKRAI+DKNARIG+NVKI+NSD+VQEAARET+GYFIKSGIVTIIKDALIPSGT++
Sbjct:  432 EADKRFLAAKGSVPIGIGKNSHIKRAIVDKNARIGENVKIINSDNVQEAARETEGYFIKSGIVTIIKDALIPSGTVL 508          
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGS_SOLTU (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 8.035e-33
Identity = 69/77 (89.61%), Postives = 73/77 (94.81%), Query Frame = 3
Query:   12 DADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            DADR+ LAAKGSVPIGIGKN HIKRAIIDKNARIGDNVKI+N D+VQEAARETDGYFIKSGIVT+IKDALIPSG II
Sbjct:  445 DADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 521          
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGS_BRANA (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Brassica napus GN=AGPS1 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.049e-32
Identity = 67/77 (87.01%), Postives = 75/77 (97.40%), Query Frame = 3
Query:   12 DADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            DADR  LAAKGS+PIGIG++SHIKRAIIDKNARIGDNVKI+N+D+VQEAARETDGYFIKSGIVT+IKDALIPSGT+I
Sbjct:  444 DADRTLLAAKGSIPIGIGRDSHIKRAIIDKNARIGDNVKIINTDNVQEAARETDGYFIKSGIVTVIKDALIPSGTVI 520          
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGS_ARATH (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Arabidopsis thaliana GN=APS1 PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 1.979e-31
Identity = 65/75 (86.67%), Postives = 73/75 (97.33%), Query Frame = 3
Query:   18 DRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            ++  L+AKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI+NSD+VQEAARETDGYFIKSGIVT+IKDALIP+GT+I
Sbjct:  446 EKSLLSAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIINSDNVQEAARETDGYFIKSGIVTVIKDALIPTGTVI 520          
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGS_WHEAT (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-S PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 7.521e-31
Identity = 63/77 (81.82%), Postives = 72/77 (93.51%), Query Frame = 3
Query:   12 DADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            +AD++ LA KG +PIGIGKNSHIKRAIIDKNARIGDNV I+N D+VQEAARETDGYFIKSGIVT+IKDAL+PSGT+I
Sbjct:  397 EADKKLLAEKGGIPIGIGKNSHIKRAIIDKNARIGDNVMIINVDNVQEAARETDGYFIKSGIVTVIKDALLPSGTVI 473          
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGS_HORVU (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 7.521e-31
Identity = 63/77 (81.82%), Postives = 72/77 (93.51%), Query Frame = 3
Query:   12 DADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            +AD++ LA KG +PIGIGKNSHIKRAIIDKNARIGDNV I+N D+VQEAARETDGYFIKSGIVT+IKDAL+PSGT+I
Sbjct:  437 EADKKLLAEKGGIPIGIGKNSHIKRAIIDKNARIGDNVMIINVDNVQEAARETDGYFIKSGIVTVIKDALLPSGTVI 513          
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGS_SOLLC (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.188e-30
Identity = 65/77 (84.42%), Postives = 71/77 (92.21%), Query Frame = 3
Query:   12 DADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            DA+R+ LAAKGSVPIGIGKN   KRAIIDKNARIGDNVKI+N D+VQEAARETDGYFIKSGIVT+IKDALIPSG +I
Sbjct:  445 DAERKLLAAKGSVPIGIGKNCLYKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIVI 521          
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGS_ORYSJ (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=AGPS PE=2 SV=4)

HSP 1 Score: 130.568 bits (327), Expect = 3.732e-30
Identity = 61/77 (79.22%), Postives = 71/77 (92.21%), Query Frame = 3
Query:   12 DADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            +AD++ L  KG +PIGIGKN HI+RAIIDKNARIGDNVKI+N D+VQEAARETDGYFIKSGIVT+IKDAL+PSGT+I
Sbjct:  438 EADKKLLGEKGGIPIGIGKNCHIRRAIIDKNARIGDNVKIINVDNVQEAARETDGYFIKSGIVTVIKDALLPSGTVI 514          
BLAST of EY756417 vs. ExPASy Swiss-Prot
Match: GLGS_MAIZE (Glucose-1-phosphate adenylyltransferase small subunit (Fragment) OS=Zea mays GN=GLG1 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 6.367e-30
Identity = 60/77 (77.92%), Postives = 72/77 (93.51%), Query Frame = 3
Query:   12 DADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 242
            +AD++ LA  G +PIGIGKNSHI++AIIDKNARIGDNVKI+N+D+VQEAARETDGYFIK GIVT+IKDAL+PSGT+I
Sbjct:   49 EADKKLLAENGGIPIGIGKNSHIRKAIIDKNARIGDNVKILNADNVQEAARETDGYFIKGGIVTVIKDALLPSGTVI 125          
The following BLAST results are available for this feature:
BLAST of EY756417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
GLGS2_VICFA1.240e-3389.61Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS1_VICFA1.619e-3388.31Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_SOLTU8.035e-3389.61Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_BRANA1.049e-3287.01Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_ARATH1.979e-3186.67Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_WHEAT7.521e-3181.82Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_HORVU7.521e-3181.82Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_SOLLC2.188e-3084.42Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_ORYSJ3.732e-3079.22Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_MAIZE6.367e-3077.92Glucose-1-phosphate adenylyltransferase small subu... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-008-D04-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756417 ID=EY756417; Name=EY756417; organism=Citrus sinensis; type=EST; length=490bp
CCACGCGTCCGGATGCGGACAGGAGGTTTTTGGCTGCAAAGGGTAGTGTT
CCAATTGGTATTGGCAAGAATTCTCACATCAAGAGAGCAATAATCGACAA
AAATGCTCGAATTGGGGATAATGTGAAGATCGTCAACAGTGACAGTGTGC
AAGAAGCAGCAAGGGAAACAGATGGATACTTCATCAAGAGCGGGATTGTC
ACAATAATCAAGGATGCCTTGATTCCCAGTGGAACCATAATCTAAACTGT
CGTCTTCTCTTCTCAGTTTCATCCCAAGCTACGGGCACCTTCCCCTCTAC
GCTCGAGAATGTCGTAATATCGAGTCTGCTTCCACTTTACCTTTGGCCAT
CTTTTTGCTATAAGCTGTATATTTCCGGGCGGTGTAATGTTAATTATGAG
AGGAAAATAGGACCTGGAAAAGGGACATGCTGTAAAGGTCTAGTTATGCA
GAAATAAAATCTTTCATTCTATTCTAAAAAAAAAAAAAAA
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