EY728884

Overview
NameEY728884
Unique NameEY728884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728884 vs. ExPASy Swiss-Prot
Match: THD1_ARATH (Threonine dehydratase biosynthetic, chloroplastic OS=Arabidopsis thaliana GN=OMR1 PE=1 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.776e-86
Identity = 155/199 (77.89%), Postives = 174/199 (87.44%), Query Frame = 2
Query:    8 SGGANMNFDKLRVVTELANVGRQQEAVFATVMPEQSGSFKQFCELLGPMNITEFKYRFSSDKAAVVLYSVGVHTVAELEAMQERMESSQLKTYNLTQSDLVKDHLRYLMGGRLSVENEVLCRFIFPERPGSLMKFLDAFSPRWNISLFHYRGQGETGANILVGIQVPENELAEFHGHANRLGYDYAVVPDXHNFELLMH 604
            + GANMNFDKLR+VTELANVGRQQEAV AT+MPE+ GSFKQFCEL+GPMNI+EFKYR SS+K AVVLYSVGVHT  EL+A+Q+RMESSQLKT NLT SDLVKDHLRYLMGGR +V +EVLCRF FPERPG+LM FLD+FSPRWNI+LFHYRGQGETGAN+LVGIQVPE E+ EF   A  LGYDY +V D   F+LLMH
Sbjct:  394 TSGANMNFDKLRIVTELANVGRQQEAVLATLMPEKPGSFKQFCELVGPMNISEFKYRCSSEKEAVVLYSVGVHTAGELKALQKRMESSQLKTVNLTTSDLVKDHLRYLMGGRSTVGDEVLCRFTFPERPGALMNFLDSFSPRWNITLFHYRGQGETGANVLVGIQVPEQEMEEFKNRAKALGYDYFLVSDDDYFKLLMH 592          
BLAST of EY728884 vs. ExPASy Swiss-Prot
Match: THD1_SOLTU (Threonine dehydratase biosynthetic (Fragment) OS=Solanum tuberosum GN=TD PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.967e-50
Identity = 97/199 (48.74%), Postives = 138/199 (69.35%), Query Frame = 2
Query:    8 SGGANMNFDKLRVVTELANVGRQQEAVFATVMPEQSGSFKQFCELLGPMNITEFKYRFSSD-KAAVVLYSVGVHTVAELEAMQERMESSQLKTYNLTQSDLVKDHLRYLMGGRLSVENEVLCRFIFPERPGSLMKFLDAFSPRWNISLFHYRGQGETGANILVGIQVPENELAEFHGHANRLGYDYAVVPDXHNFELLM 601
            + GANM+F KL  VTELA +G   EA+ AT M EQ GSFK F +L+G MNITE  YRF+S+ K A+VLY V V   ++LE M +++ SS +KT+N + ++LV +H+++L+GG  S+ +E+   FIFPE+ G+L  FL+AFSPRWNI+L  YR QG+   N+LVG QVP++E+ EF   A+ LGY Y +      F +++
Sbjct:  159 ASGANMDFSKLHKVTELAELGSDNEALLATFMIEQPGSFKTFAKLVGSMNITEVTYRFTSERKEALVLYRVDVDEKSDLEEMIKKLNSSNMKTFNFSHNELVAEHIKHLVGGSASISDEIFGEFIFPEKAGTLSTFLEAFSPRWNITLCRYRDQGDINGNVLVGFQVPQSEMDEFKSQADGLGYPYELDNSNEAFNIVV 357          
BLAST of EY728884 vs. ExPASy Swiss-Prot
Match: THD1_SOLLC (Threonine dehydratase biosynthetic, chloroplastic OS=Solanum lycopersicum GN=TD PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.728e-47
Identity = 96/199 (48.24%), Postives = 135/199 (67.84%), Query Frame = 2
Query:    8 SGGANMNFDKLRVVTELANVGRQQEAVFATVMPEQSGSFKQFCELLGPMNITEFKYRFSSD-KAAVVLYSVGVHTVAELEAMQERMESSQLKTYNLTQSDLVKDHLRYLMGGRLSVENEVLCRFIFPERPGSLMKFLDAFSPRWNISLFHYRGQGETGANILVGIQVPENELAEFHGHANRLGYDYAVVPDXHNFELLM 601
            + GANM+F KL  VTELA +G  +EA+ AT M EQ GSFK F  L+G +N TE  YRF+S+ K A++LY V V   ++LE M E M+SS + T NL+ ++LV DHL++L+GG  ++ +E+   FI PE+  +L  FLDAFSPRWNI+L  YR QG+  A++L+G QVP+ E+ EF   A++LGY Y +      F L++
Sbjct:  395 ASGANMDFSKLHKVTELAGLGSGKEALLATFMVEQQGSFKTFVGLVGSLNFTELTYRFTSERKNALILYRVNVDKESDLEKMIEDMKSSNMTTLNLSHNELVVDHLKHLVGGSANISDEIFGEFIVPEKAETLKTFLDAFSPRWNITLCRYRNQGDINASLLMGFQVPQAEMDEFKNQADKLGYPYELDNYNEAFNLVV 593          
BLAST of EY728884 vs. ExPASy Swiss-Prot
Match: THD1_BURM1 (Threonine dehydratase biosynthetic OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=ilvA PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.165e-45
Identity = 92/186 (49.46%), Postives = 123/186 (66.13%), Query Frame = 2
Query:    8 SGGANMNFDKLRVVTELANVGRQQEAVFATVMPEQSGSFKQFCELLGPMNITEFKYRFSSDKAAVVLYSVGVHTVAELEAMQERMESSQLKTYNLTQSDLVKDHLRYLMGGRLSVE-NEVLCRFIFPERPGSLMKFLDAFSPRWNISLFHYRGQGETGANILVGIQVPENELAEFHGHANRLGYDY 562
            + GANMNFD++R V E A VG  +EAVFA  +PE+ GSFK+FC L+G  N+TEF YR +  ++A +   V +    E   +    ES   KT +LT  +L K+H+RY++GGR  +  +E L RF FPERPG+LMKFL + +P WNISLFHYR QG   ++ILVG+QVP+ + AEF      LGY Y
Sbjct:  308 TSGANMNFDRMRFVAERAEVGEAREAVFAVTIPEERGSFKRFCSLVGDRNVTEFNYRIADAQSAHIFVGVQIRRRGESADIAANFESHGFKTADLTHDELSKEHIRYMVGGRSPLALDERLFRFEFPERPGALMKFLSSMAPDWNISLFHYRNQGADYSSILVGLQVPQADHAEFERFLAALGYPY 493          
BLAST of EY728884 vs. ExPASy Swiss-Prot
Match: THD1_HAEIN (Threonine dehydratase biosynthetic OS=Haemophilus influenzae GN=ilvA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.435e-37
Identity = 83/198 (41.92%), Postives = 113/198 (57.07%), Query Frame = 2
Query:   14 GANMNFDKLRVVTELANVGRQQEAVFATVMPEQSGSFKQFCELLGPMNITEFKYRFSSDKAAVVLYSVGVHTVAELEAMQ--ERMESSQLKTYNLTQSDLVKDHLRYLMGGRLSVENEVLCRFIFPERPGSLMKFLDAFSPRWNISLFHYRGQGETGANILVGIQVPENELAEFHGHANRLGYDYAVVPDXHNFELLM 601
            GAN+NF  LR V+E   +G  +EA+ A  MPEQ GSF +F  +LG   +TEF YR++ DK A V   VGV T  E E       +  +     +++  D+ K H+RYLMGGR + +NE L  F FPE+ G+L+KFL+    RWNISLFHYR  G    NIL G Q+ + E AEF     +L Y +  V    ++   +
Sbjct:  317 GANLNFHTLRYVSERCEIGENREALLAVTMPEQPGSFLKFAYVLGNRAVTEFSYRYADDKRACVF--VGVRTTNEQEKADIIADLTKNGFDVEDMSDDDIAKTHVRYLMGGRAANDNERLYTFEFPEQKGALLKFLETLQNRWNISLFHYRAHGADYGNILAGFQIEQREQAEFEQGLAQLNYVFEDVTKSKSYRYFL 512          
BLAST of EY728884 vs. ExPASy Swiss-Prot
Match: THD1_PASMU (Threonine dehydratase biosynthetic OS=Pasteurella multocida GN=ilvA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.685e-36
Identity = 77/190 (40.53%), Postives = 114/190 (60.00%), Query Frame = 2
Query:   14 GANMNFDKLRVVTELANVGRQQEAVFATVMPEQSGSFKQFCELLGPMNITEFKYRFSSDKAAVVLYSVGVHTVAELEAMQERMESSQLKTYNLTQSDLVKDHLRYLMGGRL-SVENEVLCRFIFPERPGSLMKFLDAF-SPRWNISLFHYRGQGETGANILVGIQVPENELAEFHGHANRLGYDYAVVPD 577
            GAN+NF  LR V+E   +G Q EA+ A  +PEQ GSF +FC +LG + +TEFKYR++ DK A +   V +    E + +  +++ +     +L+  D+ K H+RY++GGR  S   E L  F FPE+ G+L+KFL+      WNIS+FHYR  G    N+L G Q+ + +L  F+ H  +LGY Y  V +
Sbjct:  315 GANLNFHTLRYVSERCEIGEQHEALLAVTIPEQPGSFLKFCHILGHVPVTEFKYRYADDKQACIFVGVRITGQEEKQTIINQLQQNGYDLIDLSNDDIAKTHVRYMIGGRSNSPLKERLYSFEFPEQKGALLKFLETLGQTHWNISVFHYRAHGADYGNVLAGFQLNDEDLDAFNQHLEKLGYVYQDVTE 504          
BLAST of EY728884 vs. ExPASy Swiss-Prot
Match: THDH_ARXAD (Threonine dehydratase, mitochondrial OS=Arxula adeninivorans GN=ILV1 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.975e-33
Identity = 79/201 (39.30%), Postives = 112/201 (55.72%), Query Frame = 2
Query:   14 GANMNFDKLRVVTELANVGRQQEAVFATVMPEQSGSFKQFCELLGPMNITEFKYRFS------SDKAAVVLYSVGVHTV-AELEAMQERMESSQLKTYNLTQSDLVKDHLRYLMGGRLSVENEVLCRFIFPERPGSLMKFLDAFSPRWNISLFHYRGQGETGANILVGIQVPENELAEFHGHANRLGYDYAVVPDXHNFEL 595
            GANM+FD+LR V+E A +G   E      +PE+ GSF +  +L+ P  +TEF YR+S      SD  A V  S  V    AE+  + +  + +     +++ ++  K H RYL+G    V NE + RF FPERPG+L+KFL     +WNI+LFHYR QG   A +L GI VP +E  +F    + L Y YA   D   ++L
Sbjct:  345 GANMDFDRLRFVSERAKLGEGSEVFIVATIPEKPGSFGKLIDLVHPRAVTEFSYRYSNGELEKSDGKAHVYISFSVDNAKAEVPRILDDFKGAGFDAIDISHNEFPKSHPRYLVGANQPVTNERVFRFEFPERPGALVKFLHGVKSKWNITLFHYRNQGSDIAKVLAGISVPSHESDQFQQFLDNLEYPYAEETDNVVYKL 545          
BLAST of EY728884 vs. ExPASy Swiss-Prot
Match: THD1_ECOLI (Threonine dehydratase biosynthetic OS=Escherichia coli (strain K12) GN=ilvA PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.477e-32
Identity = 77/190 (40.53%), Postives = 109/190 (57.37%), Query Frame = 2
Query:    2 HASGGANMNFDKLRVVTELANVGRQQEAVFATVMPEQSGSFKQFCELLGPMNITEFKYRFSSDKAAVVLYSVGVHTVAELEAMQE---RMESSQLKTYNLTQSDLVKDHLRYLMGGRLSVE-NEVLCRFIFPERPGSLMKFLDAFSPRWNISLFHYRGQGETGANILVGIQVPENELAEFHGHANRLGYD 559
            H   GAN+NF  LR V+E   +G Q+EA+ A  +PE+ GSF +FC+LLG  ++TEF YRF+  K A +   VGV     LE  +E    +        +L+  ++ K H+RY++GGR S    E L  F FPE PG+L++FL+     WNISLFHYR  G     +L   ++ ++E  +F    N LGYD
Sbjct:  312 HILSGANVNFHGLRYVSERCELGEQREALLAVTIPEEKGSFLKFCQLLGGRSVTEFNYRFADAKNACIF--VGVRLSRGLEERKEILQMLNDGGYSVVDLSDDEMAKLHVRYMVGGRPSHPLQERLYSFEFPESPGALLRFLNTLGTYWNISLFHYRSHGTDYGRVLAAFELGDHE-PDFETRLNELGYD 498          
BLAST of EY728884 vs. ExPASy Swiss-Prot
Match: THD1_SALTY (Threonine dehydratase biosynthetic OS=Salmonella typhimurium GN=ilvA PE=3 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 1.250e-31
Identity = 76/190 (40.00%), Postives = 108/190 (56.84%), Query Frame = 2
Query:    2 HASGGANMNFDKLRVVTELANVGRQQEAVFATVMPEQSGSFKQFCELLGPMNITEFKYRFSSDKAAVVLYSVGVHTVAELEAMQE---RMESSQLKTYNLTQSDLVKDHLRYLMGGRLSVE-NEVLCRFIFPERPGSLMKFLDAFSPRWNISLFHYRGQGETGANILVGIQVPENELAEFHGHANRLGYD 559
            H   GAN+NF  LR V+E   +G Q+EA+ A  +PE+ GSF +FC+LLG   +TEF YRF+  K A +   VGV     LE  +E   ++        +L+  ++ K H+RY++GGR S    E L  F FPE PG+L+KFL      WNISLFHYR  G     +L   ++ ++E  +F    + LGY+
Sbjct:  312 HVLSGANVNFHGLRYVSERCELGEQREALLAVTIPEEKGSFLKFCQLLGGRMVTEFNYRFADAKNACIF--VGVRVSQGLEERKEIITQLCDGGYSVVDLSDDEMAKLHVRYMVGGRPSKPLQERLYSFEFPESPGALLKFLHTLGTHWNISLFHYRSHGTDYGRVLAAFELGDHE-PDFETRLHELGYE 498          
BLAST of EY728884 vs. ExPASy Swiss-Prot
Match: THDH_YEAST (Threonine dehydratase, mitochondrial OS=Saccharomyces cerevisiae GN=ILV1 PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 1.058e-30
Identity = 69/192 (35.94%), Postives = 105/192 (54.69%), Query Frame = 2
Query:   14 GANMNFDKLRVVTELANVGRQQEAVFATVMPEQSGSFKQFCELLGPMNITEFKYRFSSD---------KAAVVLYSVGVHTVAELEAMQERMESSQLKTYNLTQSDLVKDHLRYLMGGRLSVENEVLCRFIFPERPGSLMKFLDAFSPRWNISLFHYRGQGETGANILVGIQVPENELAEFHGHANRLGYDY 562
            GANMNFD+LR V+E A +G  +E      +P+  G+FK+  +++ P ++TEF YR++           KA +      V    E++ + +++ +   +  +++ ++L K H RYL+GG   V NE +  F FPERPG+L +FL   S  WN++LFHYR  G     +L GI VP  E   F      LGY Y
Sbjct:  370 GANMNFDRLRFVSERAVLGEGKEVFMLVTLPDVPGAFKKMQKIIHPRSVTEFSYRYNEHRHESSSEVPKAYIYTSFSVVDREKEIKQVMQQLNALGFEAVDISDNELAKSHGRYLVGGASKVPNERIISFEFPERPGALTRFLGGLSDSWNLTLFHYRNHGADIGKVLAGISVPPRENLTFQKFLEDLGYTY 561          
The following BLAST results are available for this feature:
BLAST of EY728884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
THD1_ARATH1.776e-8677.89Threonine dehydratase biosynthetic, chloroplastic ... [more]
THD1_SOLTU5.967e-5048.74Threonine dehydratase biosynthetic (Fragment) OS=S... [more]
THD1_SOLLC4.728e-4748.24Threonine dehydratase biosynthetic, chloroplastic ... [more]
THD1_BURM11.165e-4549.46Threonine dehydratase biosynthetic OS=Burkholderia... [more]
THD1_HAEIN4.435e-3741.92Threonine dehydratase biosynthetic OS=Haemophilus ... [more]
THD1_PASMU1.685e-3640.53Threonine dehydratase biosynthetic OS=Pasteurella ... [more]
THDH_ARXAD2.975e-3339.30Threonine dehydratase, mitochondrial OS=Arxula ade... [more]
THD1_ECOLI1.477e-3240.53Threonine dehydratase biosynthetic OS=Escherichia ... [more]
THD1_SALTY1.250e-3140.00Threonine dehydratase biosynthetic OS=Salmonella t... [more]
THDH_YEAST1.058e-3035.94Threonine dehydratase, mitochondrial OS=Saccharomy... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-H02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728884 ID=EY728884; Name=EY728884; organism=Citrus sinensis; type=EST; length=875bp
CCACGCGTCCGGTGGAGCAAACATGAACTTTGATAAACTGAGGGTGGTGA
CAGAACTTGCCAATGTTGGTAGGCAACAGGAAGCTGTGTTTGCAACTGTC
ATGCCAGAGCAGTCCGGGAGTTTCAAACAATTTTGTGAACTTTTGGGGCC
TATGAATATCACTGAGTTCAAATACCGATTTAGTTCTGATAAAGCAGCTG
TGGTTCTCTACAGTGTTGGCGTTCACACGGTTGCTGAACTTGAAGCAATG
CAAGAGCGAATGGAGTCTTCTCAACTTAAAACCTACAATCTCACACAAAG
TGACTTGGTTAAAGATCACCTGAGATATTTGATGGGGGGCAGATTAAGTG
TTGAAAACGAGGTCCTTTGTCGTTTTATTTTCCCTGAGCGGCCTGGTTCT
TTGATGAAGTTCTTGGATGCTTTCAGTCCGCGTTGGAATATTAGCTTGTT
CCATTACCGTGGTCAGGGTGAAACCGGTGCCAACATATTAGTAGGAATCC
AGGTTCCAGAGAATGAGCTGGCTGAGTTTCACGGTCATGCCAACAGGCTT
GGATATGATTATGCAGTTGTACCTGATGANCACAACTTCGAGCTTTTGAT
GCACTGATTAAAGCTTGTCGTGTGATATTAGCTCTCAGTTGGATTGGCCC
AGTAGACACGCTCAATTAGTCAGAGAGAAAAAGGAAGAAAGGGAGNAGGA
NAANCAAAGGGCCTCTAAAATCTAAATACCCTGTATTAGTCGAAAGAACG
GGATCCTGTCTTTACCATGAGAAGGGTTTCCCCCCTAGTTTGGATTAATG
ATATTATGGTGGTCCCTGGTCCCGGGGAAAAGGGGGCCCGTCGGAGTCTA
GGACGGTCGCCTAACGTTTGAGTGT
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