EY753816

Overview
NameEY753816
Unique NameEY753816
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY753816_ssr547 microsatellite EY753816_ssr547:547..558. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY753816 vs. ExPASy Swiss-Prot
Match: MGP_ARATH (Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 2.200e-58
Identity = 101/139 (72.66%), Postives = 115/139 (82.73%), Query Frame = 1
Query:   46 LMFPNTFLCEICNKGFQRDHNLQLDKTGHNLPWKLKERTNKVERNKVYVCPEPTCVHHDPSRALGDLTGIKKHFSINHGEKKWRCEKCSRKYAAQSDCKAHSKICGT**YKCDWGKLFSRRDSLITHRAFCDVLAEDSA 462
            LM  N FLCEIC KGFQRD NLQL + GHNLPWKLK+RT+K  R +VYVCPE +CVHH P+RALGDLTGIKKHF   HGEKKW+CEKC+++YA QSD KAHSK CGT  Y+CD G +FSRRDS ITHRAFCD LAE++A
Sbjct:   64 LMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETA 202          
BLAST of EY753816 vs. ExPASy Swiss-Prot
Match: NUC_ARATH (Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 8.361e-58
Identity = 101/139 (72.66%), Postives = 113/139 (81.29%), Query Frame = 1
Query:   46 LMFPNTFLCEICNKGFQRDHNLQLDKTGHNLPWKLKERTNKVERNKVYVCPEPTCVHHDPSRALGDLTGIKKHFSINHGEKKWRCEKCSRKYAAQSDCKAHSKICGT**YKCDWGKLFSRRDSLITHRAFCDVLAEDSA 462
            LM  N FLCE+C KGFQRD NLQL + GHNLPWKLK+RT+K  R +VYVCPE TCVHH  SRALGDLTGIKKHF   HGEKKW CEKC+++YA QSD KAHSK CGT  Y+CD G +FSRRDS ITHRAFCD LAE++A
Sbjct:   60 LMATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHSSRALGDLTGIKKHFCRKHGEKKWTCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETA 198          
BLAST of EY753816 vs. ExPASy Swiss-Prot
Match: JKD_ARATH (Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 9.244e-57
Identity = 101/140 (72.14%), Postives = 114/140 (81.43%), Query Frame = 1
Query:   46 LMFPNTFLCEICNKGFQRDHNLQLDKTGHNLPWKLKERTNK-VERNKVYVCPEPTCVHHDPSRALGDLTGIKKHFSINHGEKKWRCEKCSRKYAAQSDCKAHSKICGT**YKCDWGKLFSRRDSLITHRAFCDVLAEDSA 462
            LM  N F+CEICNKGFQRD NLQL + GHNLPWKLK+R+ + V + KVY+CP  TCVHHD SRALGDLTGIKKH+S  HGEKKW+CEKCS+KYA QSD KAH+K CGT  YKCD G LFSR+DS ITHRAFCD L E+ A
Sbjct:   76 LMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSKQEVIKKKVYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCGTREYKCDCGTLFSRKDSFITHRAFCDALTEEGA 215          
BLAST of EY753816 vs. ExPASy Swiss-Prot
Match: STOP1_ARATH (Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.547e-14
Identity = 45/143 (31.47%), Postives = 67/143 (46.85%), Query Frame = 1
Query:   46 LMFPNTFLCEICNKGFQRDHNLQLDKTGHNLPWKLKERTNKVERNKV----------YVCPEPTC---VHHDPSRALGDLTGIKKHFSINHGEKKWRCEKC-SRKYAAQSDCKAHSKICGT**YKCDWGKLFSRRDSLITHRA 432
            ++ P+T  C IC KGF+RD NL++   GH   +K      K  +  V          Y CP   C     H   + L  +  +K H+   H +K + C +C ++K++  +D K H K CG   + C  G  FSR+D L  H A
Sbjct:  238 ILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKESVPGSEPMLIKRYSCPFLGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSFTCSRCHTKKFSVIADLKTHEKHCGKNKWLCSCGTTFSRKDKLFGHIA 380          
The following BLAST results are available for this feature:
BLAST of EY753816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
MGP_ARATH2.200e-5872.66Zinc finger protein MAGPIE OS=Arabidopsis thaliana... [more]
NUC_ARATH8.361e-5872.66Zinc finger protein NUTCRACKER OS=Arabidopsis thal... [more]
JKD_ARATH9.244e-5772.14Zinc finger protein JACKDAW OS=Arabidopsis thalian... [more]
STOP1_ARATH2.547e-1431.47Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-007-C03-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753816 ID=EY753816; Name=EY753816; organism=Citrus sinensis; type=EST; length=919bp
TAGCNGTCGGTGCCGGNATTAAAAGGCTCGACCCACGCGTCCGGTTTGAT
GTTTCCAAACACATTCTTATGCGAGATCTGTAACAAGGGGTTTCAAAGAG
ACCACAATCTTCAGCTTGATAAAACAGGACATAACCTGCCGTGGAAGTTA
AAGGAGAGAACAAACAAAGTGGAGAGGAATAAGGTTTATGTCTGTCCTGA
GCCCACATGTGTTCATCATGATCCATCAAGGGCTCTTGGGGACCTCACTG
GGATTAAGAAGCACTTTAGCATAAATCATGGTGAAAAAAAGTGGAGATGT
GAAAAGTGCTCTAGGAAATATGCAGCTCAATCAGATTGTAAAGCTCACTC
CAAGATTTGTGGCACATGATAGTATAAATGTGACTGGGGAAAACTTTTCT
CTAGAAGGGACAGTTTGATCACCCACAGAGCCTTCTGTGACGTTTTAGCT
GAAGATAGTGCAATGACAATCACAGTATACCCACTTTGCTGTGGCTTGCA
ACAACGACCAACTTCCTCGGAAGACCACATGTGGAATTGCCCTGTCCATC
ATCATCATACAGCTCCAAGCCGAGGACTACATGCCCTACAACTACTAGCC
GTGAAAATCGAAGCAACAAATAGCAGCATCCTATTCCACCTTGGATAGCT
TGCCCTTTTGAATAGACCTTTCTTCACAGTGTTTTTGAGGATACATGTTT
TCACGGGTTGTACTTCTCACGAAAACCAAGCCCTAGCCCTGGCCTAACCC
TATTCTACTAGGTTCGACCATTTGAGCCACCGGGGCGACTGGTCCCTACC
TCGTTGGGACATTCTTTTGGGAAAGCAGGCCTATGGCGCGATGTTGAAAA
ACAGCCTGTGCTTTCCTGGCCCTGGTGTTGTTCCTTACCCACCAATTTTA
AAGCCTGGGGGTCCGAAAA
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