EY753754

Overview
NameEY753754
Unique NameEY753754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: PRP16_HUMAN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo sapiens GN=DHX38 PE=1 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 3.303e-53
Identity = 110/214 (51.40%), Postives = 141/214 (65.89%), Query Frame = 3
Query:   72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERXYSYLESALKQHLYT-CSRTRGDVL 710
            LPI   ++++            +GETGSGK+TQL+Q LH  GYT  G+IG TQP             +E+G  LGEEVGYAIRFED TSE TLIKY+TDG+LLRE L   DL  YS II+DEAHERSLNTD+L GL++ +V  R S LK+++TSAT+D EK + FF N P  ++PG+ +PV+IL SK     Y+E+A+KQ L    S   GD+L
Sbjct:  532 LPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEEMGGNLGEEVGYAIRFEDCTSENTLIKYMTDGILLRESLREADLDHYSAIIMDEAHERSLNTDVLFGLLREVV-ARRSDLKLIVTSATMDAEKFAAFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQSLQVHLSGAPGDIL 744          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: PRP16_BOVIN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos taurus GN=DHX38 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.303e-53
Identity = 110/214 (51.40%), Postives = 141/214 (65.89%), Query Frame = 3
Query:   72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERXYSYLESALKQHLYT-CSRTRGDVL 710
            LPI   ++++            +GETGSGK+TQL+Q LH  GYT  G+IG TQP             +E+G  LGEEVGYAIRFED TSE TLIKY+TDG+LLRE L   DL  YS II+DEAHERSLNTD+L GL++ +V  R S LK+++TSAT+D EK + FF N P  ++PG+ +PV+IL SK     Y+E+A+KQ L    S   GD+L
Sbjct:  532 LPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEEMGGNLGEEVGYAIRFEDCTSESTLIKYMTDGILLRESLREADLDHYSAIIMDEAHERSLNTDVLFGLLREVV-ARRSDLKLIVTSATMDAEKFASFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQSLQVHLSGAPGDIL 744          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX8_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 2.894e-49
Identity = 108/233 (46.35%), Postives = 148/233 (63.52%), Query Frame = 3
Query:   15 KTLILLESSKPRVN*SMANLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERXYSYLESALKQHLYT-CSRTRGDVL 710
            KT    + SK  +     +LPI + ++++            IGETGSGK+TQ++Q L   GYT  G IG TQP             +E G RLGEEVGYAIRFED T   T+IKY+TDG+LLREIL + +LS YSVI+LDEAHER+++TD+L GL+K+L+  R   L++++TSATLD EK S +F NC    +PG+ +PVEIL++K+    YL++AL   L    +   GD+L
Sbjct:  496 KTPTFGQRSKLSIQEQRESLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTIHTDVLFGLLKKLMKRRLD-LRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPETDYLDAALITVLQIHLTEPEGDIL 727          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: MOG1_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1 OS=Caenorhabditis elegans GN=mog-1 PE=2 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 3.779e-49
Identity = 97/201 (48.26%), Postives = 135/201 (67.16%), Query Frame = 3
Query:   72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF-SNCPTLNVPGKLYPVEILHSKERXYSYLESALKQ 671
            LP+    +K+            +GETGSGK+TQL+Q L   G+  SG+IG TQP              E+GV LG++VGYAIRFED TSE+T+IKY+TDG+LLRE L +  L  YS II+DEAHERSLNTD+L GL++ ++  RA  LK+++TSAT+D +K + FF  NCPT  +PG+ +PVE+ H++     Y+++A+KQ
Sbjct:  441 LPVFACRQKMMNVIRENNVVIIVGETGSGKTTQLAQYLLEDGFGDSGLIGCTQPRRVAAMSVARRVADEMGVDLGQDVGYAIRFEDCTSEKTIIKYMTDGILLRECLGDGSLDQYSAIIMDEAHERSLNTDVLFGLLREVIAKRAD-LKLIVTSATMDADKFADFFGGNCPTFTIPGRTFPVELFHARTPVEDYVDAAVKQ 640          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: PRP16_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 OS=Schizosaccharomyces pombe GN=prp16 PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.436e-48
Identity = 101/214 (47.20%), Postives = 140/214 (65.42%), Query Frame = 3
Query:   72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERXYSYLESALKQHLYT-CSRTRGDVL 710
            LP     E++            +GETGSGK+TQL+Q L+  GY ++G+IG TQP             +E+GVRLG  VGY+IRFED T   T+IKY+TDGVLLRE L   +L  YSVII+DEAHERSLNTDIL+GL+K++++ R   +K+L+TSAT++ +K S FF   P   +PG+ YPV+I+ +K     Y+E+A++Q L    S+  GD+L
Sbjct:  492 LPAFAVREQLLSVIRDNQVLIVVGETGSGKTTQLAQFLYEDGYHRNGMIGCTQPRRVAAMSVAKRVSEEMGVRLGSTVGYSIRFEDVTGPDTVIKYMTDGVLLRESLMQNNLEKYSVIIMDEAHERSLNTDILMGLLKKVLS-RRRDIKLLVTSATMNSQKFSDFFGGAPQFTIPGRTYPVDIMFAKAPCSDYVEAAVRQVLQIHLSQPAGDIL 704          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: CDC28_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28 OS=Schizosaccharomyces pombe GN=cdc28 PE=2 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.876e-48
Identity = 104/219 (47.49%), Postives = 142/219 (64.84%), Query Frame = 3
Query:   60 SMANLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSGI-IGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERXYSYLESALKQHLYT-CSRTRGDVL 710
            S  +LP+ QY++ +            + ETGSGK+TQL Q LH  GYTK    I  TQP             +E+ VRLG+EVGY+IRFE+ TSE+T+IKYLTDG+LLRE L+ PDL+ YSVII+DEAHER+L+TDIL GLVK +   R   LK+LI+SAT+D EK S +F   P   VPG+ YPV+I ++ +   +Y+++A+   L    ++  GD+L
Sbjct:  414 SRKSLPVYQYKDDLLKAINEYQVLLIVAETGSGKTTQLPQFLHEAGYTKGNKKICCTQPRRVAAMSVAARVAKEMDVRLGQEVGYSIRFENATSEKTVIKYLTDGMLLREFLTEPDLASYSVIIIDEAHERTLHTDILFGLVKDIARFRPD-LKVLISSATIDAEKFSAYFDEAPVFYVPGRRYPVDIYYTPQPEANYIQAAITTILQIHTTQPAGDIL 631          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX8_MOUSE (ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.074e-47
Identity = 96/199 (48.24%), Postives = 133/199 (66.83%), Query Frame = 3
Query:   69 NLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERXYSYLESAL 665
            +LPI + +E++            IGETGSGK+TQ++Q L   GYT  G IG TQP             +E G  LG+EVGY IRFED TS  T+IKY+TDG+LLRE L +PDL+ Y++I+LDEAHER+++TD+L GL+K+ V  R   +K+++TSATLD  K S++F   P   +PG+ YPVEIL++KE    YL+++L
Sbjct:  588 SLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKR-QDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEILYTKEPETDYLDASL 785          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX8_HUMAN (ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.074e-47
Identity = 96/199 (48.24%), Postives = 133/199 (66.83%), Query Frame = 3
Query:   69 NLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERXYSYLESAL 665
            +LPI + +E++            IGETGSGK+TQ++Q L   GYT  G IG TQP             +E G  LG+EVGY IRFED TS  T+IKY+TDG+LLRE L +PDL+ Y++I+LDEAHER+++TD+L GL+K+ V  R   +K+++TSATLD  K S++F   P   +PG+ YPVEIL++KE    YL+++L
Sbjct:  564 SLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKR-QDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEILYTKEPETDYLDASL 761          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: DHX16_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.344e-46
Identity = 91/199 (45.73%), Postives = 134/199 (67.34%), Query Frame = 3
Query:   69 NLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERXYSYLESAL 665
            +LP+  Y E++            +GETGSGK+TQ+ Q LH  G++K+G IG TQP             +E+G +LG EVGY+IRFED TS++T+++Y+TDG+L+RE L+ PDL+ YSV+I+DEAHER+L+TDIL GL+K +   R   LK+LI+SAT+D E+ S +F   PT N+PG+ Y V   +++     YL++A+
Sbjct:  466 SLPVYPYREQLIDAVREYQVLIIVGETGSGKTTQIPQYLHEAGFSKTGKIGCTQPRRVAAMSVAARVAEEVGCKLGNEVGYSIRFEDCTSQKTVLQYMTDGMLVREFLTAPDLASYSVLIIDEAHERTLHTDILFGLLKDITRFRPD-LKLLISSATMDAERFSDYFDGAPTFNIPGRKYEVTTHYTQAPEADYLDAAV 663          
BLAST of EY753754 vs. ExPASy Swiss-Prot
Match: PRP22_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 OS=Schizosaccharomyces pombe GN=prp22 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.293e-46
Identity = 101/215 (46.98%), Postives = 137/215 (63.72%), Query Frame = 3
Query:   72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRHGYTK-SGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERXYSYLESALKQHLYT-CSRTRGDVL 710
            LP+ +  ++             +GETGSGK+TQ++Q L   GYT  S +IG TQP             +E+G R+GEEVGY IRFED+TS  T IKY+TDG+L RE L +P LS YSVIILDEAHER++ TD+L GL+K  V L+   LK+++TSATLD E+ S +F  CP   +PG+ YPVEI+++K+    YL++AL   +    S   GD+L
Sbjct:  510 LPVFKLRKQFLEAVSKNQILVLLGETGSGKTTQITQYLAEEGYTSDSKMIGCTQPRRVAAMSVAKRVAEEVGCRVGEEVGYTIRFEDKTSRMTQIKYMTDGMLQRECLVDPLLSKYSVIILDEAHERTVATDVLFGLLKGTV-LKRPDLKLIVTSATLDAERFSSYFYKCPIFTIPGRSYPVEIMYTKQPEADYLDAALMTVMQIHLSEGPGDIL 723          
The following BLAST results are available for this feature:
BLAST of EY753754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PRP16_HUMAN3.303e-5351.40Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
PRP16_BOVIN3.303e-5351.40Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX8_ARATH2.894e-4946.35Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
MOG1_CAEEL3.779e-4948.26Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
PRP16_SCHPO1.436e-4847.20Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
CDC28_SCHPO1.876e-4847.49Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX8_MOUSE2.074e-4748.24ATP-dependent RNA helicase DHX8 OS=Mus musculus GN... [more]
DHX8_HUMAN2.074e-4748.24ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN... [more]
DHX16_DICDI1.344e-4645.73Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
PRP22_SCHPO2.293e-4646.98Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-006-E07-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753754 ID=EY753754; Name=EY753754; organism=Citrus sinensis; type=EST; length=863bp
CACGATAAAATCCTAAAACCCTAATCTTGCTCGAAAGCTCCAAACCTCGA
GTTAATTGATCGATGGCGAATCTTCCGATTCTCCAATATGAAGAAAAGAT
AGTAGAAACGGTGGAGCAGAATCCAGTGGTGGTGGTTATCGGAGAGACGG
GGTCCGGCAAGAGCACGCAGCTCTCTCAGATACTCCACCGACATGGCTAC
ACCAAATCCGGAATTATTGGCGTTACTCAGCCTCGCCGAGTCGCTGCCGT
ATCCGTTGCCAGACGAGTTGCACAGGAACTTGGTGTTCGGCTTGGGGAGG
AAGTAGGTTATGCAATACGATTTGAGGATAGAACATCGGAAAGAACACTT
ATTAAATACCTTACTGATGGAGTTCTTCTTCGAGAAATTCTGTCTAATCC
AGATCTTAGTCCGTATTCAGTTATCATATTAGATGAAGCCCATGAGAGGA
GTCTCAACACGGACATATTGCTGGGTCTTGTGAAACGCTTGGTTAATTTG
CGAGCATCAAAATTAAAGATTTTGATCACGTCAGCAACTCTTGATGGTGA
AAAAGTTTCCAAGTTCTTTTCAAATTGCCCCACATTGAATGTCCCTGGAA
AGTTGTATCCTGTGGAGATATTGCACAGCAAGGAGCGTNCCTACAGCTAT
CTTGAGTCTGCTTTGAAACAGCATTTGTATACATGTTCGAGAACCAGAGG
TGACGTGTTGANTTCATGACTGGACAGATGAATTANAAAGCTAGTTTAAA
GGTAGAAGATAATTCAAAGCTGNATGAAGGTCCTGCATGATGCTGAATCC
TCCCCTCATGGNTCTTGCACCGAAAGCAGGTCGTGTATTTATCCTCCCCT
CCAATGTAGGCAT
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