EY753354
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY753354 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2) HSP 1 Score: 143.28 bits (360), Expect = 1.794e-33 Identity = 87/202 (43.07%), Postives = 106/202 (52.48%), Query Frame = 2 Query: 158 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTRXXXXXXXXXXXXXXXXXXXXXXXXXXVPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILEWGGGTWDKDTVFVLFEXXXXXXKRAGEFYILGV 763 IFVKTL G++F++EVKP D V DVK IETV+G++ YPAA+QMLI+QGKVLKD+TTLEEN V ENSF+VIML+K K ST VP VYG AASNLVAG LE +QQIL+ GGG+WD+DTV +RA E+ G+ Sbjct: 3 IFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLEENNVVENSFIVIMLSKTKASPSGASTASAPAPSATQPQTVATPQVSAPTASVPVP-------------TSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGI 190
BLAST of EY753354 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2) HSP 1 Score: 125.176 bits (313), Expect = 5.056e-28 Identity = 60/84 (71.43%), Postives = 74/84 (88.10%), Query Frame = 2 Query: 158 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGST 409 IFVKTLKGT F++EVKPED+V DVK IE+VQG+DVYPAA+QMLI+QGKVLKD+TT+EENKVAENSF+VIM+ K+K + S+ Sbjct: 3 IFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFIVIMMNKSKPASAAASS 86
BLAST of EY753354 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2) HSP 1 Score: 117.472 bits (293), Expect = 1.054e-25 Identity = 70/200 (35.00%), Postives = 95/200 (47.50%), Query Frame = 2 Query: 164 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTRXXXXXXXXXXXXXXXXXXXXXXXXXXVPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILEWGGGTWDKDTVFVLFEXXXXXXKRAGEFYILGV 763 VKTLKG+ F++ V P DT+ VK IE Q D YP QQ+LI+ GKVLKD+TTL ENKV E F+V+ML+K+K + G + VP YG AAS LV+G+++E +QQI+E GGG+WDK+TV +RA ++ G+ Sbjct: 5 VKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFLVVMLSKSKTASSAGPSSTQPTSTTTSTISSTTLAAPSTTQSIAVP----------------ASNSTPVQEQPTAQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGI 188
BLAST of EY753354 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2) HSP 1 Score: 100.523 bits (249), Expect = 1.334e-20 Identity = 51/76 (67.11%), Postives = 59/76 (77.63%), Query Frame = 2 Query: 158 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 385 I VKTLKG++F +EV V DVK IET QG +YPA QQMLI+QGKVLKDDTTL+ENKV ENSF+VIML + K Sbjct: 3 ISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENKVLENSFLVIMLRQGK 78
BLAST of EY753354 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3) HSP 1 Score: 91.2781 bits (225), Expect = 8.090e-18 Identity = 43/74 (58.11%), Postives = 55/74 (74.32%), Query Frame = 2 Query: 164 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 385 VKTLKG+ F++ V P DT+ VK IE QG D YP QQ+LI+ GKVLKD+T+L ENKV E F+V+ML+K+K Sbjct: 5 VKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSK 78
BLAST of EY753354 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.093e-14 Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = 2 Query: 158 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT 394 + +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K T Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVT 81
BLAST of EY753354 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.093e-14 Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = 2 Query: 158 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT 394 + +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K T Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVT 81
BLAST of EY753354 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.865e-14 Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 2 Query: 158 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 385 + +KTL+ +F +++ PE+TV +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78
BLAST of EY753354 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.436e-14 Identity = 37/79 (46.84%), Postives = 56/79 (70.89%), Query Frame = 2 Query: 158 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT 394 + +KTL+ +F +++ P++TV +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K T Sbjct: 3 VTLKTLQQQTFKIDIDPDETVRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVT 81
BLAST of EY753354 vs. ExPASy Swiss-Prot
Match: RD23A_HUMAN (UV excision repair protein RAD23 homolog A OS=Homo sapiens GN=RAD23A PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.746e-12 Identity = 35/84 (41.67%), Postives = 57/84 (67.86%), Query Frame = 2 Query: 158 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGST 409 I +KTL+ +F + ++P++TV +K KIE +G D +P A Q LIY GK+L DD + + ++ E +FVV+M+TK K G+G++ Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK--AGQGTS 86 The following BLAST results are available for this feature:
BLAST of EY753354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
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Sequences
The
following sequences are available for this feature:
EST sequence >EY753354 ID=EY753354; Name=EY753354; organism=Citrus sinensis; type=EST; length=890bpback to top |