FK826671

Overview
NameFK826671
Unique NameFK826671
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length339
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FK826671_ssr261 microsatellite FK826671_ssr261:261..272. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12618 contig Csv1_Contig12618:721..1059. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826671 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.932e-29
Identity = 58/73 (79.45%), Postives = 68/73 (93.15%), Query Frame = 3
Query:    3 IEYQRNAELDPVKRLYPGGYVDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFN 221
            IE+QRN+ELDP KR+YPGGY DPLGLA+DP KL+ L+LAEIKH+RLAMVAFLIF +QAAFTGKGP+SF+ATFN
Sbjct:  203 IEFQRNSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLATFN 275          
BLAST of FK826671 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.602e-21
Identity = 54/78 (69.23%), Postives = 61/78 (78.21%), Query Frame = 3
Query:    3 IEYQRNAELDPVKRLYPGG-YVDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFNQ*PI 233
            IE+QRNAELD  KRLYPGG + DPLGLA+DP K   LQLAEIKHARLAMVAFL F +QAA TGKGP++  AT    P+
Sbjct:  202 IEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 279          
BLAST of FK826671 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.569e-21
Identity = 54/78 (69.23%), Postives = 60/78 (76.92%), Query Frame = 3
Query:    3 IEYQRNAELDPVKRLYPGG-YVDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFNQ*PI 233
            IE+QRNAELD  KRLYPGG + DPLGLASDP K   LQLAEIKHARLAMV FL F +QAA TGKGP++  AT    P+
Sbjct:  199 IEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPL 276          
BLAST of FK826671 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.413e-14
Identity = 38/71 (53.52%), Postives = 49/71 (69.01%), Query Frame = 3
Query:    6 EYQRNAELDPVKRLYPGGYVDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGI-QAAFTGKGPISFVAT 215
            E QR  E DP K+ YPGG  DPLG + DP K E L+L EIK+ RLAM+AF+ F + Q+A+ G GP+  +AT
Sbjct:  153 EQQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLAT 223          
BLAST of FK826671 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 1.606e-13
Identity = 39/72 (54.17%), Postives = 50/72 (69.44%), Query Frame = 3
Query:    6 EYQRNAELDPVKRLYPGGYVDPLGLAS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATF 218
            E+ RN+E +P KR YPGG  DPL LAS D  +   L+ AEIKHARLAMV+F  +G+QA  TG+G +  +A F
Sbjct:  199 EFYRNSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLAKF 270          
BLAST of FK826671 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.955e-12
Identity = 34/72 (47.22%), Postives = 50/72 (69.44%), Query Frame = 3
Query:    3 IEYQRNAELDPVKRLYPGGYVDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGI-QAAFTGKGPISFVAT 215
            +E+QR+ E D  K+ YPGG  DPLG + DP K E L++ EIK+ RLA++A + F + Q+A+ G GP+  +AT
Sbjct:  153 VEHQRSMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLAT 224          
The following BLAST results are available for this feature:
BLAST of FK826671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CB4C_ARATH7.932e-2979.45Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB4A_ARATH1.602e-2169.23Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH3.569e-2169.23Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB121_HORVU9.413e-1453.52Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB29_CHLRE1.606e-1354.17Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB11_SOLLC3.955e-1247.22Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
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Properties
Property NameValue
Genbank descriptionclone233 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 233, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826671 ID=FK826671; Name=FK826671; organism=Citrus sinensis; type=EST; length=339bp
ACATAGAATATCAAAGAAATGCAGAGCTTGATCCAGTGAAAAGACTATAC
CCTGGTGGGTATGTTGATCCTCTTGGCTTGGCCTCAGATCCTGGGAAGCT
TGAAAATCTTCAATTGGCTGAAATCAAGCACGCTCGTCTAGCAATGGTAG
CATTTTTAATCTTTGGAATCCAGGCTGCTTTTACTGGCAAAGGGCCCATC
AGCTTTGTGGCTACATTTAACCAGTGACCCATTTCATAAAATTTCATGCC
TTGGGTTCTCTTAATTAATTAATTGTAAAATTCAATATCAATACTTCACT
ATGGATGCTGCTACTTTTATATAATTATTGTATATTATG
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