EY719593

Overview
NameEY719593
Unique NameEY719593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY719593 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 3.892e-77
Identity = 134/174 (77.01%), Postives = 151/174 (86.78%), Query Frame = 1
Query:   13 PLSFNGSGAATS-VPSSSFFGTSLKKVSSRIPPSKVPSASFKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGHQP 528
            PLS NGSGA  S VPS++FFG+SLKK +++ P  K  S +FKI A E+ E++QT +D+WKGLAYD SDDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDYISQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+SLPNIK+PLILGIWGGKGQGKSFQCELVFAKMG  P
Sbjct:   15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINP 186          

HSP 2 Score: 42.3578 bits (98), Expect = 3.892e-77
Identity = 20/27 (74.07%), Postives = 23/27 (85.19%), Query Frame = 2
Query:  512 RWGINPIMMSGRKLESGMAGKPAKLIR 592
            + GINPIMMS  +LESG AG+PAKLIR
Sbjct:  181 KMGINPIMMSAGELESGNAGEPAKLIR 207          
BLAST of EY719593 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 3.894e-77
Identity = 134/174 (77.01%), Postives = 151/174 (86.78%), Query Frame = 1
Query:   13 PLSFNGSGAATS-VPSSSFFGTSLKKVSSRIPPSKVPSASFKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGHQP 528
            PLS NGSGA  S VPS++FFG+SLKK +++ P  K  S +FKI A E+ E++QT +D+WKGLAYD SDDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDYISQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+SLPNIK+PLILGIWGGKGQGKSFQCELVFAKMG  P
Sbjct:   15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINP 186          

HSP 2 Score: 42.3578 bits (98), Expect = 3.894e-77
Identity = 20/27 (74.07%), Postives = 23/27 (85.19%), Query Frame = 2
Query:  512 RWGINPIMMSGRKLESGMAGKPAKLIR 592
            + GINPIMMS  +LESG AG+PAKLIR
Sbjct:  181 KMGINPIMMSAGELESGNAGEPAKLIR 207          
BLAST of EY719593 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 3.261e-76
Identity = 130/172 (75.58%), Postives = 147/172 (85.47%), Query Frame = 1
Query:   13 PLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGHQP 528
            P + NGS ++ SVPSS+F G+SLKKV+SR   SKV S S +I A VDE+KQT +DRWKGLA+D SDDQQDITRGKG VDSLFQAP G+GTH+A+MSSY+YIS GLR YN DN +DG YIAPAFMDKLVVHITKNFM+LPN+KVPLILGIWGGKGQGKSFQCELVFAKM   P
Sbjct:   15 PPNLNGSSSSASVPSSTFLGSSLKKVNSRFTNSKVSSGSLRIVASVDEDKQTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMKVPLILGIWGGKGQGKSFQCELVFAKMRISP 186          

HSP 2 Score: 37.7354 bits (86), Expect = 3.261e-76
Identity = 18/24 (75.00%), Postives = 21/24 (87.50%), Query Frame = 2
Query:  521 INPIMMSGRKLESGMAGKPAKLIR 592
            I+PIMMS  +LESG AG+PAKLIR
Sbjct:  184 ISPIMMSAGELESGNAGEPAKLIR 207          
BLAST of EY719593 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 2.093e-75
Identity = 131/175 (74.86%), Postives = 146/175 (83.43%), Query Frame = 1
Query:   16 LSFNGSGAATSVPSSSFFGTSLKKV-SSRIPPSKVPSASFKITA---EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGHQP 528
            L+ NGSG   S PSS+FFGTSLKKV SSR+P SK+ S SFKI A   E++E +QT+ DRW+GLAYD SDDQQDITRGKG VDSLFQAPM  GTHYAV+SS+ Y+S GLR YN DN  DG YIAPAF+DKLVVHI KNFM+LPNIKVPLILG+WGGKGQGKSFQCELVFAKMG  P
Sbjct:   16 LNLNGSGGGASGPSSAFFGTSLKKVISSRVPNSKLTSGSFKIVAADKEIEETQQTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINP 190          

HSP 2 Score: 42.3578 bits (98), Expect = 2.093e-75
Identity = 20/27 (74.07%), Postives = 23/27 (85.19%), Query Frame = 2
Query:  512 RWGINPIMMSGRKLESGMAGKPAKLIR 592
            + GINPIMMS  +LESG AG+PAKLIR
Sbjct:  185 KMGINPIMMSAGELESGNAGEPAKLIR 211          
BLAST of EY719593 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 5.535e-73
Identity = 128/176 (72.73%), Postives = 141/176 (80.11%), Query Frame = 1
Query:   13 PLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITAE---VDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGHQP 528
            PLS N S A TSVPS++FFG +LKKV  + +   KV + S +I AE   VD  KQT  DRWKGL  D SDDQQDITRGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+ LPNIKVPLILGIWGGKGQGKSFQCELVF KMG  P
Sbjct:   15 PLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRIVAEQIDVDPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINP 190          

HSP 2 Score: 42.3578 bits (98), Expect = 5.535e-73
Identity = 20/27 (74.07%), Postives = 23/27 (85.19%), Query Frame = 2
Query:  512 RWGINPIMMSGRKLESGMAGKPAKLIR 592
            + GINPIMMS  +LESG AG+PAKLIR
Sbjct:  185 KMGINPIMMSAGELESGNAGEPAKLIR 211          
BLAST of EY719593 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 6.041e-72
Identity = 125/180 (69.44%), Postives = 141/180 (78.33%), Query Frame = 1
Query:    1 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITAE---VDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGHQP 528
            A   PLS N S A TSVPS++FFG +LKKV  + +   KV + S +I AE    D  KQT  DRWKGL  D SDDQQDI RGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YN+DNT+DG YIAP+FMDKLVVHITKNF+ LPNIKVPLILG+WGGKGQGKSFQCELVF KMG  P
Sbjct:   11 ANKAPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNRSLRIAAEEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINP 190          

HSP 2 Score: 42.3578 bits (98), Expect = 6.041e-72
Identity = 20/27 (74.07%), Postives = 23/27 (85.19%), Query Frame = 2
Query:  512 RWGINPIMMSGRKLESGMAGKPAKLIR 592
            + GINPIMMS  +LESG AG+PAKLIR
Sbjct:  185 KMGINPIMMSAGELESGNAGEPAKLIR 211          
BLAST of EY719593 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.906e-70
Identity = 123/178 (69.10%), Postives = 145/178 (81.46%), Query Frame = 1
Query:    1 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGHQP 528
            A+  PLS N S A TSVPS++FFG SLKKV ++ +   KV + + ++ A EVDE   TK+DRWKGL  + SDDQQDI RGKG VDSLFQAP GTGTH+A+M+SY+Y+SQ L+TY LDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPLILG+WGGKGQGKSFQCELVF KMG  P
Sbjct:   11 ASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVSSPKVSNRNLRVVAQEVDE---TKEDRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINP 185          

HSP 2 Score: 42.3578 bits (98), Expect = 1.906e-70
Identity = 20/27 (74.07%), Postives = 23/27 (85.19%), Query Frame = 2
Query:  512 RWGINPIMMSGRKLESGMAGKPAKLIR 592
            + GINPIMMS  +LESG AG+PAKLIR
Sbjct:  180 KMGINPIMMSAGELESGNAGEPAKLIR 206          
BLAST of EY719593 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.908e-70
Identity = 119/170 (70.00%), Postives = 138/170 (81.18%), Query Frame = 1
Query:   19 SFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGHQP 528
            + N S     VP+S+F G+ LK VSSR   SK+ + +FKI AE DE KQT++D+W+GLA+D SDDQQDITRGKG  D LFQAPMGTGTH AV+SSY+YIS GLR Y+ DN +DG YIAPAFMDKL VHI KNF++LPNIKVPLILG+WGGKGQGKSFQCELVFAKMG  P
Sbjct:   15 TLNNSNYGGLVPNSAFLGSRLK-VSSRFTTSKMVTGNFKIVAEQDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINP 183          

HSP 2 Score: 42.3578 bits (98), Expect = 1.908e-70
Identity = 20/27 (74.07%), Postives = 23/27 (85.19%), Query Frame = 2
Query:  512 RWGINPIMMSGRKLESGMAGKPAKLIR 592
            + GINPIMMS  +LESG AG+PAKLIR
Sbjct:  178 KMGINPIMMSAGELESGNAGEPAKLIR 204          
BLAST of EY719593 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 263.462 bits (672), Expect = 1.257e-69
Identity = 143/222 (64.41%), Postives = 167/222 (75.23%), Query Frame = 1
Query:   16 LSFNGSGAATSVPSSSFFGTSLKK-VSSRIPPSKVPSASFKITA---EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGHQPNYDEWPKIGKWHGWKTR*IDQAEGTVEGNLIYSGKGKKCGWLWINDI 669
            L+ NGSGA  S P+S+FFGTSLKK V+SR+P SKV + SFKI A   E++E++QT +DRWKGLAYD SDDQQDITRGKG VD LFQAPM  GTHYAVMSSY+Y+S GLR   LDN  DG YIAPAF+DKLVVHITKNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMG  P      ++   +  +   + +       +LI   KGK C  L+IND+
Sbjct:   16 LNLNGSGAGASAPTSAFFGTSLKKAVASRVPNSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLR--QLDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLI--AKGKMCA-LFINDL 232          
BLAST of EY719593 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 1.301e-66
Identity = 140/230 (60.87%), Postives = 167/230 (72.61%), Query Frame = 1
Query:   13 PLSFNGSGA-ATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGHQPNYDEWPKIGKWHGWKTR*IDQAEGTVEGNLIYSGKGKKCGWLWINDI*AWSWIGGMG 699
            PLS NGSG+ A S P+S+F G  +  VS     +K  + SFK+ A V E+KQT  DRW+GLAYD SDDQQDITRGKG VDS+FQAPMGTGTH+AV+SSY+Y+SQGLR YNLDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPLILGIWGGKGQGKSFQCELV AKMG  P      ++   +  +   + +       +LI   KGK C  L+IND+ A +  G MG
Sbjct:   15 PLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA-VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLI--KKGKMC-CLFINDLDAGA--GRMG 238          
The following BLAST results are available for this feature:
BLAST of EY719593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA1_LARTR3.892e-7777.01Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR3.894e-7777.01Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO3.261e-7675.58Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU2.093e-7574.86Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC5.535e-7372.73Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC6.041e-7269.44Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN1.906e-7069.10Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA1.908e-7070.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU1.257e-6964.41Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH1.301e-6660.87Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-104-C03-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY719593 ID=EY719593; Name=EY719593; organism=Citrus sinensis; type=EST; length=924bp
GCTGCTGCTGTACCGTTGAGCTTCAATGGCTCTGGTGCTGCAACCTCTGT
CCCAAGCTCATCTTTCTTTGGCACCAGCTTGAAGAAGGTAAGCTCAAGGA
TCCCCCCATCCAAGGTCCCTTCTGCGAGCTTCAAGATTACTGCTGAAGTC
GATGAGAACAAGCAGACCAAGCAGGACAGATGGAAGGGCCTTGCCTACGA
CGAATCTGATGACCAACAAGACATCACCAGAGGAAAAGGTGCTGTGGACT
CTCTGTTCCAAGCCCCCATGGGAACCGGAACTCACTATGCTGTCATGAGT
TCTTATGACTACATCAGCCAAGGTCTCCGCACATACAACTTGGACAACAC
GATCGACGGTCTCTACATTGCCCCTGCTTTCATGGACAAGCTTGTTGTTC
ACATCACCAAGAACTTCATGTCCCTGCCCAACATCAAGGTTCCTCTCATC
TTGGGTATTTGGGGAGGCAAAGGACAAGGAAAATCATTCCAATGTGAGCT
TGTTTTCGCCAAGATGGGGCATCAACCCAATTATGATGAGTGGCCGAAAA
TTGGAAAGTGGCATGGCTGGAAAACCCGCTAAATTGATCAGGCTGAAGGA
ACCGTTGAGGGCAACTTGATTTATTCAGGAAAGGGGAAAAAATGTGGCTG
GCTCTGGATCAATGATATTTGAGCCTGGAGCTGGATCGGAGGGATGGGCA
CCTCCCCAGAAATGGGTTAAACCAACTACGATTGGTTAAGGCCGGACCAC
GAAGACAGTTGGGGTGAAGAGCGCAGTGTTTGGGTCCCATATCCCCGTGG
AGATGTTTAAGCAATGAGGAAGAGGAAAAATCCCCGGTGGCTGACCTGAG
TTTGAGACGAGGCCGGGACAGACTGACCCCTCACGAGAGGCACTTGGGGG
TGATGGGCCCCCCGCAGCGGCGAG
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