EY692581

Overview
NameEY692581
Unique NameEY692581
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY692581_ssr63 microsatellite EY692581_ssr63:63..74. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig797 contig Csv1_Contig797:310..1223. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY692581 vs. ExPASy Swiss-Prot
Match: RMP_DICDI (RNA polymerase II subunit 5-mediating protein homolog OS=Dictyostelium discoideum GN=rmp PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 9.321e-25
Identity = 75/237 (31.65%), Postives = 127/237 (53.59%), Query Frame = 1
Query:  145 QKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELHHGIMVPFGKAAFFPGRLIHTNEFMVLLGEGYYAERTSKQTVEILKRRGKVLDSQVDSLKAMMKDLQAEASFFDTTASEAA-----EGLVEIREEYGEENLSERASESGLLKQDSSRLS--------------EADNLKDEDEEYARIMSRLDELEKERLAW-----EIENGSAXSKQNNVG*SDXAKYGDEDMN 783
            Q+  K+ +  ++E Q  +E +K   +D   LI+ +Q LP+ L   IMVP GK AFF G L +TNE ++LLG+ Y+A+R+SKQT++I++RR K +D+ ++ L+  +K L+   S   T  S+A      + +VEI+EEY  +   E+  +     Q S+  +              E    K+ DEE+ +++ RL  LE++         E E     +K+ ++  SD  +Y D++ N
Sbjct:    4 QEIFKKYEQKVVEYQDHIEELKSTKNDYKQLIDTLQHLPDTLQPKIMVPMGKLAFFEGNLKNTNEILILLGDNYFAKRSSKQTIDIIQRRDKDIDTSINDLREQIKGLKQRVS-MTTDLSKALHEKEYDNIVEIKEEYNSDEEREKEKKRKQKPQKSTTTTTTTTTSKDKPKTEEEKKKSKEMDEEFDKMLKRLSILEEKENKMGDDYDEEEFNKKFNKKLDITGSD-EEYDDDNYN 238          
BLAST of EY692581 vs. ExPASy Swiss-Prot
Match: RMP_BOVIN (Unconventional prefoldin RPB5 interactor OS=Bos taurus GN=RMP PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.293e-20
Identity = 73/246 (29.67%), Postives = 125/246 (50.81%), Query Frame = 1
Query:   79 MEEPTAKGTVTSLSSMFSVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELHHGIMVPFGKAAFFPGRLIHTNEFMVLLGEGYYAERTSKQTVEILKRRGKVLDSQVDSLKAMMKDLQAEASFFD--TTASEAAEGLVEIREEYG---EENLSERASESGLLKQDSSRLSEAD---NLKDED-EEYARIMSRLDELEK-ERLAWEIENGSAXSKQNNVG*SDXAKYGDEDMNL 786
            ME P       S ++     +V +  +  +  +   Q++++  K+  +D   L   +  LP++L + IMVPFG  AF PG+L+HTNE  VLLG+ ++A+ ++KQ V +++ R + +   +D LK +MK+ ++   F +     S+AA  +V+IREE     E     R +     K  +S + EA+   +LK +D      +  RL+ELE+ E L  EI+  S        G    ++   ED N+
Sbjct:    1 MEAPPDPRPHASAAAPLRAPEVARLREEQEKVVTNCQEKIQHWKKVDNDYNALQERLSTLPDKLSYNIMVPFGPFAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEFTEDLQKMSDAAGDIVDIREEIKTDFEFKAKHRIAHKPHSKPKTSDIFEAEFANDLKSKDLLADKELWDRLEELERQEELLGEIDIDSKPDTVIANGEDVSSEEEKEDQNI 246          
BLAST of EY692581 vs. ExPASy Swiss-Prot
Match: RMP_HUMAN (Unconventional prefoldin RPB5 interactor OS=Homo sapiens GN=RMP PE=1 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 1.179e-19
Identity = 63/201 (31.34%), Postives = 109/201 (54.23%), Query Frame = 1
Query:  139 DVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELHHGIMVPFGKAAFFPGRLIHTNEFMVLLGEGYYAERTSKQTVEILKRRGKVLDSQVDSLKAMMKDLQAEASFFD--TTASEAAEGLVEIREEYG---EENLSERASESGLLKQDSSRLSEADNLKDEDEE----YARIMSRLDELEK-ERLAWEIEN 711
            DV +  +  +  +   Q+ ++  K+  +D   L   +  LP++L + IMVPFG  AF PG+L+HTNE  VLLG+ ++A+ ++KQ V +++ R + +   +D LK +MK+ ++   F +     S+AA  +V+IREE     E     R +     K  +S + EAD   D   +       + +RL+ELE+ E L  E+++
Sbjct:   29 DVARLREEQEKVVTNCQERIQHWKKVDNDYNALRERLSTLPDKLSYNIMVPFGPFAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEFTEDLQKMSDAAGDIVDIREEIKCDFEFKAKHRIAHKPHSKPKTSDIFEADIANDVKSKDLLADKELWARLEELERQEELLGELDS 229          
BLAST of EY692581 vs. ExPASy Swiss-Prot
Match: RMP_MOUSE (Unconventional prefoldin RPB5 interactor OS=Mus musculus GN=Rmp PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 9.982e-19
Identity = 64/214 (29.91%), Postives = 116/214 (54.21%), Query Frame = 1
Query:  112 SLSSMFSVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELHHGIMVPFGKAAFFPGRLIHTNEFMVLLGEGYYAERTSKQTVEILKRRGKVLDSQVDSLKAMMKDLQAEASFFD--TTASEAAEGLVEIREEYG---EENLSERASESGLLKQDSSRLSEAD--------NLKDEDEEYARIMSRLDELEK-ERLAWEIEN 711
            S ++     +V +  +  +  +   Q++++  ++  +D + L   ++ LP++L + +MVPFG  AF PG+L+HTNE  VLLG+ ++A+ ++KQ V +++ R + +   +D  K ++K+ ++   F +     S+AA   V+IREE     E    +R +     K  +S + EAD        N  D DE +A    RL+ELE+ E L  E+E+
Sbjct:   18 SAAAPLRAPEVARLREEQEKVVTNCQEKIQHWEKVDNDYSALQERLRTLPDKLSYDVMVPFGPLAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDFKKVLKNFESRVEFTEDLQKMSDAAGDFVDIREEIKSDFEFKGKQRIAHKPHSKPKTSDIFEADFENGVKPKNTFDADELWA----RLEELERQEELLGELES 227          
The following BLAST results are available for this feature:
BLAST of EY692581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RMP_DICDI9.321e-2531.65RNA polymerase II subunit 5-mediating protein homo... [more]
RMP_BOVIN5.293e-2029.67Unconventional prefoldin RPB5 interactor OS=Bos ta... [more]
RMP_HUMAN1.179e-1931.34Unconventional prefoldin RPB5 interactor OS=Homo s... [more]
RMP_MOUSE9.982e-1929.91Unconventional prefoldin RPB5 interactor OS=Mus mu... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-002-B12-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692581 ID=EY692581; Name=EY692581; organism=Citrus sinensis; type=EST; length=913bp
CCACGCGTCCGAAGCGGACCAGTAAAGTTAACAGATCAAGACCCACTTCA
GAGAAGCAATCGAATCAATCAATCAGCAATGGAAGAGCCAACAGCGAAAG
GAACAGTGACTTCGCTCTCGTCGATGTTTTCAGTCGACGACGTGCAGAAA
GCAGCTAAGCGCGTGCAGGATGCGCTGTTGGAGAAGCAGCAGGAGCTTGA
GCGAGTTAAGGAATTCATCAGCGATAACACAAACCTCATTAACCTCGTCC
AGAAACTTCCCGAAGAACTTCACCACGGTATCATGGTTCCTTTTGGAAAA
GCAGCATTTTTTCCTGGGCGTTTGATACATACCAATGAGTTTATGGTTCT
TTTGGGAGAAGGGTATTATGCAGAGAGAACATCCAAGCAAACTGTTGAGA
TTTTGAAGAGGAGGGGGAAGGTCTTGGATTCCCAGGTTGATTCTCTCAAA
GCCATGATGAAGGATCTTCAAGCCGAGGCTTCATTTTTTGATACTACAGC
TTCTGAAGCAGCAGAGGGTCTTGTAGAGATAAGGGAAGAATATGGGGAGG
AAAATTTGTCTGAAAGGGCATCTGAATCAGGTCTGTTGAAACAAGATTCT
TCTCGGCTTTCTGAAGCTGACAACCTGAAAGATGAAGATGAAGAATATGC
CCGTATTATGTCCAGGTTGGATGAACTTGAGAAAGAAAGACTTGCTTGGG
AAATTGAAAATGGAAGTGCTNGAAGTAAGCAAAATAATGTGGGCTAAAGT
GACNATGCAAAATATGGAGACGAAGATATGAACTTGANGAGGCAGAACTT
GCTGCTGAAACTGAAAATAGGAGTGATGAAATAAGCAAATAATGCNGCTG
GAAGTGACATGAGAACNNATGAGATGACAGCTATACTGGTTCTGACAGTT
TCAANTCNGATTT
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