EY692581
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY692581 vs. ExPASy Swiss-Prot
Match: RMP_DICDI (RNA polymerase II subunit 5-mediating protein homolog OS=Dictyostelium discoideum GN=rmp PE=3 SV=2) HSP 1 Score: 114.39 bits (285), Expect = 9.321e-25 Identity = 75/237 (31.65%), Postives = 127/237 (53.59%), Query Frame = 1 Query: 145 QKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELHHGIMVPFGKAAFFPGRLIHTNEFMVLLGEGYYAERTSKQTVEILKRRGKVLDSQVDSLKAMMKDLQAEASFFDTTASEAA-----EGLVEIREEYGEENLSERASESGLLKQDSSRLS--------------EADNLKDEDEEYARIMSRLDELEKERLAW-----EIENGSAXSKQNNVG*SDXAKYGDEDMN 783 Q+ K+ + ++E Q +E +K +D LI+ +Q LP+ L IMVP GK AFF G L +TNE ++LLG+ Y+A+R+SKQT++I++RR K +D+ ++ L+ +K L+ S T S+A + +VEI+EEY + E+ + Q S+ + E K+ DEE+ +++ RL LE++ E E +K+ ++ SD +Y D++ N Sbjct: 4 QEIFKKYEQKVVEYQDHIEELKSTKNDYKQLIDTLQHLPDTLQPKIMVPMGKLAFFEGNLKNTNEILILLGDNYFAKRSSKQTIDIIQRRDKDIDTSINDLREQIKGLKQRVS-MTTDLSKALHEKEYDNIVEIKEEYNSDEEREKEKKRKQKPQKSTTTTTTTTTSKDKPKTEEEKKKSKEMDEEFDKMLKRLSILEEKENKMGDDYDEEEFNKKFNKKLDITGSD-EEYDDDNYN 238
BLAST of EY692581 vs. ExPASy Swiss-Prot
Match: RMP_BOVIN (Unconventional prefoldin RPB5 interactor OS=Bos taurus GN=RMP PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 5.293e-20 Identity = 73/246 (29.67%), Postives = 125/246 (50.81%), Query Frame = 1 Query: 79 MEEPTAKGTVTSLSSMFSVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELHHGIMVPFGKAAFFPGRLIHTNEFMVLLGEGYYAERTSKQTVEILKRRGKVLDSQVDSLKAMMKDLQAEASFFD--TTASEAAEGLVEIREEYG---EENLSERASESGLLKQDSSRLSEAD---NLKDED-EEYARIMSRLDELEK-ERLAWEIENGSAXSKQNNVG*SDXAKYGDEDMNL 786 ME P S ++ +V + + + + Q++++ K+ +D L + LP++L + IMVPFG AF PG+L+HTNE VLLG+ ++A+ ++KQ V +++ R + + +D LK +MK+ ++ F + S+AA +V+IREE E R + K +S + EA+ +LK +D + RL+ELE+ E L EI+ S G ++ ED N+ Sbjct: 1 MEAPPDPRPHASAAAPLRAPEVARLREEQEKVVTNCQEKIQHWKKVDNDYNALQERLSTLPDKLSYNIMVPFGPFAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEFTEDLQKMSDAAGDIVDIREEIKTDFEFKAKHRIAHKPHSKPKTSDIFEAEFANDLKSKDLLADKELWDRLEELERQEELLGEIDIDSKPDTVIANGEDVSSEEEKEDQNI 246
BLAST of EY692581 vs. ExPASy Swiss-Prot
Match: RMP_HUMAN (Unconventional prefoldin RPB5 interactor OS=Homo sapiens GN=RMP PE=1 SV=3) HSP 1 Score: 97.4413 bits (241), Expect = 1.179e-19 Identity = 63/201 (31.34%), Postives = 109/201 (54.23%), Query Frame = 1 Query: 139 DVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELHHGIMVPFGKAAFFPGRLIHTNEFMVLLGEGYYAERTSKQTVEILKRRGKVLDSQVDSLKAMMKDLQAEASFFD--TTASEAAEGLVEIREEYG---EENLSERASESGLLKQDSSRLSEADNLKDEDEE----YARIMSRLDELEK-ERLAWEIEN 711 DV + + + + Q+ ++ K+ +D L + LP++L + IMVPFG AF PG+L+HTNE VLLG+ ++A+ ++KQ V +++ R + + +D LK +MK+ ++ F + S+AA +V+IREE E R + K +S + EAD D + + +RL+ELE+ E L E+++ Sbjct: 29 DVARLREEQEKVVTNCQERIQHWKKVDNDYNALRERLSTLPDKLSYNIMVPFGPFAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEFTEDLQKMSDAAGDIVDIREEIKCDFEFKAKHRIAHKPHSKPKTSDIFEADIANDVKSKDLLADKELWARLEELERQEELLGELDS 229
BLAST of EY692581 vs. ExPASy Swiss-Prot
Match: RMP_MOUSE (Unconventional prefoldin RPB5 interactor OS=Mus musculus GN=Rmp PE=1 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 9.982e-19 Identity = 64/214 (29.91%), Postives = 116/214 (54.21%), Query Frame = 1 Query: 112 SLSSMFSVDDVQKAAKRVQDALLEKQQELERVKEFISDNTNLINLVQKLPEELHHGIMVPFGKAAFFPGRLIHTNEFMVLLGEGYYAERTSKQTVEILKRRGKVLDSQVDSLKAMMKDLQAEASFFD--TTASEAAEGLVEIREEYG---EENLSERASESGLLKQDSSRLSEAD--------NLKDEDEEYARIMSRLDELEK-ERLAWEIEN 711 S ++ +V + + + + Q++++ ++ +D + L ++ LP++L + +MVPFG AF PG+L+HTNE VLLG+ ++A+ ++KQ V +++ R + + +D K ++K+ ++ F + S+AA V+IREE E +R + K +S + EAD N D DE +A RL+ELE+ E L E+E+ Sbjct: 18 SAAAPLRAPEVARLREEQEKVVTNCQEKIQHWEKVDNDYSALQERLRTLPDKLSYDVMVPFGPLAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDFKKVLKNFESRVEFTEDLQKMSDAAGDFVDIREEIKSDFEFKGKQRIAHKPHSKPKTSDIFEADFENGVKPKNTFDADELWA----RLEELERQEELLGELES 227 The following BLAST results are available for this feature:
BLAST of EY692581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EY692581 ID=EY692581; Name=EY692581; organism=Citrus sinensis; type=EST; length=913bpback to top |