EY692442

Overview
NameEY692442
Unique NameEY692442
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3302 contig Csv1_Contig3302:211..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY692442 vs. ExPASy Swiss-Prot
Match: Y5258_ARATH (Uncharacterized protein At5g22580 OS=Arabidopsis thaliana GN=At5g22580 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 7.731e-30
Identity = 60/96 (62.50%), Postives = 74/96 (77.08%), Query Frame = 1 
Query:   13 VIVQFKEGVVVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVEFSATFSAAIEKIVLLDFPTVLGKA 300
            V+V+FKE   V++I+KG++ LVS+ID VKSFEWG+D E  +MLRQGFTHAF MTF  K+ Y  F SHP HVEFSA F+A I+KIVLLDFP    K+
Sbjct:   10 VVVKFKEDTKVDEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFENKDGYVAFTSHPLHVEFSAAFTAVIDKIVLLDFPVAAVKS 105
[Close]
BLAST of EY692442 vs. ExPASy Swiss-Prot
Match: POP3_ARATH (Probable protein Pop3 OS=Arabidopsis thaliana GN=At3g17210 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.025e-15
Identity = 36/92 (39.13%), Postives = 61/92 (66.30%), Query Frame = 1 
Query:   13 VIVQFKEGVV---VEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVEFSATFSAAIEKIVLLDF 279
            ++  FK+GV    +E+++KG   LV+ I+ +K+F WG+DV   E L QG+TH F  TF  KE    + +HP+HVEF+  F  +++K++++D+
Sbjct:   12 LLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVS-IENLHQGYTHIFESTFESKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDY 102
The following BLAST results are available for this feature:
BLAST of EY692442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y5258_ARATH7.731e-3062.50Uncharacterized protein At5g22580 OS=Arabidopsis t... [more]
POP3_ARATH7.025e-1539.13Probable protein Pop3 OS=Arabidopsis thaliana GN=A... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-071-F03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692442 ID=EY692442; Name=EY692442; organism=Citrus sinensis; type=EST; length=472bp
CGGACGCGTGGGGTGATTGTCCAGTTCAAGGAAGGTGTGGTTGTGGAGGA
TATTGTCAAAGGGATGAAAAAGCTAGTTTCAGAGATTGATGCTGTCAAAT
CTTTTGAATGGGGCCAAGATGTAGAAGGGCAGGAGATGCTTAGGCAAGGC
TTCACACATGCATTCTTGATGACATTCAACAAGAAGGAAGACTATACAAC
CTTTGCAAGCCATCCCAGCCACGTCGAATTCTCGGCTACATTTTCAGCTG
CTATTGAGAAGATTGTCCTGCTTGATTTCCCTACCGTGCTTGGCAAAGCA
CCAGCAGCATGACACTCCAAAATTCTAGGCGATAATAATTAAGTGAGATT
AGTATTAATCTGCTATATGCGTGTGTATGTTTGGTTTGCTTATCTCTATG
AGTTAATATTATTATTTGCCAGTATCAGTAACTATTTGGTTTGTCACAAA
AAAAAAAAAAAAAAAAAAAAAA
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