EY691854

Overview
NameEY691854
Unique NameEY691854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1014
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY691854_ssr113 microsatellite EY691854_ssr113:113..127. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9192 contig Csv1_Contig9192:1..1014. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY691854 vs. ExPASy Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-B PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 8.003e-12
Identity = 36/87 (41.38%), Postives = 59/87 (67.82%), Query Frame = 3
Query:  246 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIA-KPGKERFGGY 503
            ++ +  L F T+E +L++ FS +G+++EV +VKD  TK+S+G+ F+ + + DDA  A+ +M+ K +DGR I VD A K   +R GGY
Sbjct:    6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQAGKSSGDRRGGY 92          
BLAST of EY691854 vs. ExPASy Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.045e-11
Identity = 37/87 (42.53%), Postives = 59/87 (67.82%), Query Frame = 3
Query:  246 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIA-KPGKERFGGY 503
            ++ V  L F T E +L++ FS +G+VAEV +VKD  +K+S+G+ F+ + + +DA  A+ +M+ K++DGR I VD A K   +R GGY
Sbjct:    7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQAGKSSNDRRGGY 93          
BLAST of EY691854 vs. ExPASy Swiss-Prot
Match: MRD1_DICDI (Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium discoideum GN=mrd1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.365e-11
Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 3
Query:  240 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGK 485
            + RI VRNL ++T E  L+K FS FG+++E+ +  D  +KKSKG AFI Y   ++A+ AL  MD K   GRLI+V    PGK
Sbjct:  360 SGRIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALNDMDGKVFQGRLIHV---LPGK 438          
BLAST of EY691854 vs. ExPASy Swiss-Prot
Match: CIRBA_XENLA (Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-A PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.365e-11
Identity = 36/87 (41.38%), Postives = 58/87 (66.67%), Query Frame = 3
Query:  246 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIA-KPGKERFGGY 503
            ++ +  L F T+E  L++ F+ +G ++EV +VKD  TK+S+G+ F+ + + DDA  A+ +M+ K++DGR I VD A K   ER GGY
Sbjct:    6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQAGKSSGERRGGY 92          
BLAST of EY691854 vs. ExPASy Swiss-Prot
Match: CIRBP_RANCA (Cold-inducible RNA-binding protein OS=Rana catesbeiana GN=cirbp PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.775e-11
Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = 3
Query:  246 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIA-KPGKERFGGY 503
            ++ V  L F T E  L+  FS +G++ EV +VKD  TK+S+G+ F+ + + +DA  A+  M+ K +DGR I VD A K   +R GGY
Sbjct:    7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQAGKSSNDRRGGY 93          
BLAST of EY691854 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.848e-11
Identity = 35/87 (40.23%), Postives = 58/87 (66.67%), Query Frame = 3
Query:  246 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIA-KPGKERFGGY 503
            ++ V  L F T+E +L++ FS +G+++EV +VKD  T++S+G+ F+ + + DDA  A+ +M+ K++DGR I VD A K    R  GY
Sbjct:    7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGY 93          
BLAST of EY691854 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.848e-11
Identity = 35/87 (40.23%), Postives = 58/87 (66.67%), Query Frame = 3
Query:  246 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIA-KPGKERFGGY 503
            ++ V  L F T+E +L++ FS +G+++EV +VKD  T++S+G+ F+ + + DDA  A+ +M+ K++DGR I VD A K    R  GY
Sbjct:    7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGY 93          
The following BLAST results are available for this feature:
BLAST of EY691854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CIRBB_XENLA8.003e-1241.38Cold-inducible RNA-binding protein B OS=Xenopus la... [more]
CIRBP_XENTR1.045e-1142.53Cold-inducible RNA-binding protein OS=Xenopus trop... [more]
MRD1_DICDI1.365e-1147.56Multiple RNA-binding domain-containing protein 1 O... [more]
CIRBA_XENLA1.365e-1141.38Cold-inducible RNA-binding protein A OS=Xenopus la... [more]
CIRBP_RANCA6.775e-1141.38Cold-inducible RNA-binding protein OS=Rana catesbe... [more]
CIRBP_PONAB8.848e-1140.23Cold-inducible RNA-binding protein OS=Pongo abelii... [more]
CIRBP_HUMAN8.848e-1140.23Cold-inducible RNA-binding protein OS=Homo sapiens... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-027-D07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY691854 ID=EY691854; Name=EY691854; organism=Citrus sinensis; type=EST; length=1014bp
TGTGAAAACTCTTCAGAAAGTCTCACGCACAACACTTAGCTCCAAAACAA
GGGCGGTTGGTGGTTAGCGGCATATTCATCTCCGCCAAAACGCAGCGTAT
CTTGAGCATGTGGGCGGCGGCGGCGGCAGCAGGAACGGTTTCTTACCCCC
AACCCATGTTCGCAAATTCTCTCACAAACCGTGAGAACCCATGTTTCAGA
ACATTCAATCTGAGAGCATCACTCTCTAATTATCCGCTTGCCAGCAGAAT
CATGGTTAGAAATTTACCTTTTACTACTCATGAACATACGTTGCAAAAGG
AATTCTCAGCTTTTGGTGAAGTAGCAGAAGTTAAGCTTGTCAAGGATGAA
ATCACAAAGAAATCAAAAGGGTATGCATTTATTCAATATACCAGTCAGGA
TGATGCCTTGCTTGCGCTAGAGAGCATGGATCACAAGAATTTAGATGGCA
GGTTGATTTATGTTGACATTGCCAAACCTGGGAAAGAAAGATTTGGAGGA
TATCCAAGAAACTCTGGACCCCCGAAAACACAGCCTTTGGCTGAACAAAA
TGAAGGAACAAATTGTTGGTACTGATCAATTTTCTTACAGTCAAATAATT
GGTCCAACCCCCAAGGTTGTCAAAAAATGGCCCCATTTTTCCATCAATTT
TCGGGGAAAGCTTCCTAAATTTTGGGAAAAAAAAAACCCAAAATTTAGGT
TTGGGAGGGAAATTGGGAAACTTTCCCAAATCAACATAAATCACCAAAAA
AAAAAATTTTGAAAATTGGAAACTCCCAAAAATTAAAAAAGGAAAAAATT
TTTTTTTTGGGCAACTTAAAGATAAACATTAAGGGGGTTAGGAGAAAAAA
GCACTATGGGGGGGAAAGAGGTTTTTTGGGGGGTATGTTTGGGCGCCCAT
CAACTCTAGTTTAACCTTCTTTTTTTAAAAACTCCGGTGAGGGAGCGTTA
AGCGCGGCACGTCACGGGGTGCGGGCAGTAGATAATGAAAATAGAAAAAT
AAATAAAGTAAAAT
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