EY688710
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MSH7_ARATH (DNA mismatch repair protein Msh6-2 OS=Arabidopsis thaliana GN=MSH6-2 PE=2 SV=1) HSP 1 Score: 296.204 bits (757), Expect = 1.053e-79 Identity = 147/192 (76.56%), Postives = 168/192 (87.50%), Query Frame = 2 Query: 2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKG-DQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSD--DDDAYDTLFCLWHELKNSY 568 TETASVLQ ATQDSLVILDELGRGTSTFDGYAIAY+VFR LVE++ CR+LFATHYHPLTKEFASHP VT +HMACAFKS S+ +G DQ+LVFLYRLT GACPESYGLQVA+MAG+P +VVE AS AA AMK+SIGE+FKSSE RSEFSSLHE+WLK++V +SRV N+ +D YDTLFCLWHE+K+SY Sbjct: 914 TETASVLQNATQDSLVILDELGRGTSTFDGYAIAYSVFRHLVEKVQCRMLFATHYHPLTKEFASHPRVTSKHMACAFKSRSDYQPRGCDQDLVFLYRLTEGACPESYGLQVALMAGIPNQVVETASGAAQAMKRSIGENFKSSELRSEFSSLHEDWLKSLVGISRVAHNNAPIGEDDYDTLFCLWHEIKSSY 1105
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MSH6_ARATH (DNA mismatch repair protein Msh6-1 OS=Arabidopsis thaliana GN=MSH6-1 PE=2 SV=2) HSP 1 Score: 130.183 bits (326), Expect = 9.992e-30 Identity = 74/189 (39.15%), Postives = 115/189 (60.85%), Query Frame = 2 Query: 2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKNSY 568 +ETA +L AT++SLV+LDELGRGT+T DG AIA +V +E++ CR F+THYH L+ ++ ++P V+L HMAC G +E+ FLYRLT GACP+SYG+ VA +AG+P V++ A + + G++ + ++ + +K I +S V +SD + D+L C H + N++ Sbjct: 1144 SETAVMLTSATRNSLVVLDELGRGTATSDGQAIAESVLEHFIEKVQCRGFFSTHYHRLSVDYQTNPKVSLCHMACQIGEG----IGGVEEVTFLYRLTPGACPKSYGVNVARLAGLPDYVLQRAVIKSQEFEALYGKNHRKTDHKL------AAMIKQI--ISSVASDSDYSASKDSL-CELHSMANTF 1319
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MSH6_HUMAN (DNA mismatch repair protein Msh6 OS=Homo sapiens GN=MSH6 PE=1 SV=2) HSP 1 Score: 127.487 bits (319), Expect = 6.476e-29 Identity = 62/133 (46.62%), Postives = 90/133 (67.67%), Query Frame = 2 Query: 2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 400 +ETAS+L AT SLV++DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC ++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K Sbjct: 1195 SETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1325
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MSH6_MOUSE (DNA mismatch repair protein Msh6 OS=Mus musculus GN=Msh6 PE=1 SV=2) HSP 1 Score: 125.561 bits (314), Expect = 2.461e-28 Identity = 61/128 (47.66%), Postives = 88/128 (68.75%), Query Frame = 2 Query: 2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 385 +ETAS+L+ AT SLV++DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ V L HMAC ++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A Sbjct: 1193 SETASILRHATAHSLVLVDELGRGTATFDGTAIASAVVKELAETIKCRTLFSTHYHSLVEDYSKSVCVRLGHMACMVENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKA 1318
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MSH6_SCHPO (DNA mismatch repair protein msh6 OS=Schizosaccharomyces pombe GN=msh6 PE=1 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 6.062e-27 Identity = 63/143 (44.06%), Postives = 85/143 (59.44%), Query Frame = 2 Query: 2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSE 430 +ET +L + SLVILDELGRGTST+DG+AIAYAV LV I C F+THY L +F H V L MA A + + FLY+L G CP+SYG+ VA MAG+P+KV++AA A ++++ +S+ Sbjct: 1085 SETKKILDECGPKSLVILDELGRGTSTYDGHAIAYAVLHHLVSNIGCLGFFSTHYQSLCVDFMHHRQVRLMQMAAAVDEKI-------RRVTFLYKLEDGICPKSYGMNVASMAGLPEKVIDAAEEKASELEQASASFINASD 1220
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MSH6_DICDI (DNA mismatch repair protein Msh6 OS=Dictyostelium discoideum GN=msh6 PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 8.753e-26 Identity = 59/132 (44.70%), Postives = 85/132 (64.39%), Query Frame = 2 Query: 5 ETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 400 ET++VL+ AT+ SLVILDELGRGTSTFDGY+IAY+V L ++ +FATHY L E ++ +M C + + ++++FLY+L SG CP SYGL VA MAG+P++++ A + M+K Sbjct: 1089 ETSAVLKYATKRSLVILDELGRGTSTFDGYSIAYSVLNYLATKVQSMCIFATHYQSLAYEPTVRDLISTAYMTC-------HVDEEAKKVIFLYKLASGVCPNSYGLHVASMAGLPREIITKAEEKSTQMEK 1213
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MSH6_DROME (Probable DNA mismatch repair protein Msh6 OS=Drosophila melanogaster GN=Msh6 PE=1 SV=2) HSP 1 Score: 115.931 bits (289), Expect = 1.950e-25 Identity = 59/123 (47.97%), Postives = 82/123 (66.67%), Query Frame = 2 Query: 5 ETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 373 ET+ +L+ AT SLV+LDELGRGT+T+DG AIA +V L + CR LF+THYH L F + +TL HMAC + N +N + + FLY+ T+GACP+SYG A +AG+PQ +++ A Sbjct: 1020 ETSLILKHATCHSLVLLDELGRGTATYDGTAIAASVVNFLAN-LKCRTLFSTHYHNLIDFFHNDKRITLGHMACMVE-NEDNADPTQETVTFLYKYTAGACPKSYGFNAAKLAGMPQGIIKRA 1140
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MSH2_YEAST (DNA mismatch repair protein MSH2 OS=Saccharomyces cerevisiae GN=MSH2 PE=1 SV=2) HSP 1 Score: 110.923 bits (276), Expect = 6.273e-24 Identity = 57/168 (33.93%), Postives = 96/168 (57.14%), Query Frame = 2 Query: 5 ETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA--LAMKKSIGESFKS--------SEQRSEFSSLHEEWLKTI 478 ETAS+L+ A+++SL+I+DELGRGTST+DG+ +A+A+ + +I C LFATH+H LT+ P+V H+ + N + D+++ LY++ G +S+G+ VA + P+K+V+ A A L K+ E K +E +L +EW++ + Sbjct: 750 ETASILKNASKNSLIIVDELGRGTSTYDGFGLAWAIAEHIASKIGCFALFATHFHELTELSEKLPNVKNMHVVAHIEKNLKEQKHDDEDITLLYKVEPGISDQSFGIHVAEVVQFPEKIVKMAKRKANELDDLKTNNEDLKKAKLSLQEVNEGNIRLKALLKEWIRKV 917
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_HALHL (DNA mismatch repair protein mutS OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=mutS PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.397e-23 Identity = 60/143 (41.96%), Postives = 86/143 (60.14%), Query Frame = 2 Query: 2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSE 430 TETA++L AT +SLV++DE+GRGTSTFDG A+A+A +L RI LFATHY +T HP V H+ A + + +VFL+ + G +SYGLQVA +AGVPQ+V++AA +++ G S++ Sbjct: 682 TETANILHNATAESLVLMDEIGRGTSTFDGLALAWATAERLATRIRAFTLFATHYFEMTALEQIHPGVVNVHLEAA---------EHGERIVFLHAVRDGPANQSYGLQVAALAGVPQEVLKAAREKLRSLESGDGGDTGSAQ 815
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_BURP8 (DNA mismatch repair protein mutS OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=mutS PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.384e-23 Identity = 60/137 (43.80%), Postives = 81/137 (59.12%), Query Frame = 2 Query: 2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA-SHAALAMKKSIG 409 TE A++L AT SLV++DE+GRGTSTFDG A+A+A+ R L+ C LFATHY LT+ A PH H++ + +VFL+ + G +SYGLQVA +AGVP V+ AA H A ++S G Sbjct: 695 TEAAAILNDATPQSLVLMDEIGRGTSTFDGLALAWAIARHLLAHNGCHTLFATHYFELTQLPAEFPHAANVHLSAVEHGHG---------IVFLHAVNEGPANQSYGLQVAQLAGVPNAVIRAARKHLAYLEQQSAG 822 The following BLAST results are available for this feature:
BLAST of EY688710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >EY688710 ID=EY688710; Name=EY688710; organism=Citrus sinensis; type=EST; length=679bpback to top |