EY686994

Overview
NameEY686994
Unique NameEY686994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY686994_ssr369 microsatellite EY686994_ssr369:369..380. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS24_ARATH (40S ribosomal protein S2-4 OS=Arabidopsis thaliana GN=RPS2D PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.245e-48
Identity = 94/115 (81.74%), Postives = 105/115 (91.30%), Query Frame = 2 
Query:  164 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGTR 508
            KWVPVTKLGRLV+EGKI  +EQIYLHSLP+KEYQIID L+G  LKDEVMKIMPVQKQTRAGQRTRFKAF+VVGD++GHVGLGVKCS+EVATAIRGAIILAKLSV+ + RG  G +
Sbjct:   44 KWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNK 158
[Close]
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS23_ARATH (40S ribosomal protein S2-3 OS=Arabidopsis thaliana GN=RPS2C PE=1 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.044e-46
Identity = 95/115 (82.61%), Postives = 102/115 (88.70%), Query Frame = 2 
Query:  164 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGTR 508
            KWVPVTKLGRLV  G I+ +EQIYLHSLP+KEYQIID LIG  LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGD +GHVGLGVKCS+EVATAIRGAIILAKLSV+ V RG  G +
Sbjct:   53 KWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 167
[Close]
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS22_ARATH (40S ribosomal protein S2-2 OS=Arabidopsis thaliana GN=RPS2B PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.044e-46
Identity = 95/115 (82.61%), Postives = 102/115 (88.70%), Query Frame = 2 
Query:  164 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGTR 508
            KWVPVTKLGRLV + KI  LEQIYLHSLP+KEYQIID L+G  LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGD +GHVGLGVKCS+EVATAIRGAIILAKLSV+ V RG  G +
Sbjct:   52 KWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 166
[Close]
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS21_ARATH (40S ribosomal protein S2-1 OS=Arabidopsis thaliana GN=RPS2A PE=2 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.044e-46
Identity = 95/115 (82.61%), Postives = 102/115 (88.70%), Query Frame = 2 
Query:  164 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGTR 508
            KWVPVTKLGRLV + KI  LEQIYLHSLP+KEYQIID L+G  LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGD +GHVGLGVKCS+EVATAIRGAIILAKLSV+ V RG  G +
Sbjct:   52 KWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 166
[Close]
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS2_DROME (40S ribosomal protein S2 OS=Drosophila melanogaster GN=sop PE=1 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 6.767e-46
Identity = 90/115 (78.26%), Postives = 104/115 (90.43%), Query Frame = 2 
Query:  164 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGTR 508
            +WVPVTKLGRLVREGKI+SLE+IYL+SLPIKE++IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GH+GLGVKCS+EVATAIRGAIILAKLSV+ V RG  G +
Sbjct:   42 EWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156
[Close]
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS2_ICTPU (40S ribosomal protein S2 OS=Ictalurus punctatus GN=rps2 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.407e-43
Identity = 87/115 (75.65%), Postives = 102/115 (88.70%), Query Frame = 2 
Query:  164 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGTR 508
            +WVPVTKLGRLV++ KI+SLE+IYL+SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCS+EVATAIRGAIILAKLS++ V RG  G +
Sbjct:   44 EWVPVTKLGRLVKDMKIKSLEEIYLYSLPIKESEIIDFFLGSALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIIPVRRGYWGNK 158
[Close]
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS2_URECA (40S ribosomal protein S2 OS=Urechis caupo GN=RPS2 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.143e-43
Identity = 87/115 (75.65%), Postives = 102/115 (88.70%), Query Frame = 2 
Query:  164 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGTR 508
            +WVPVTKLGRLV++ KI++LE+IYL SLPIKE++IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCS+EVATAIRGAIILAKLSV+ V RG  G +
Sbjct:   45 EWVPVTKLGRLVKDMKIKTLEEIYLFSLPIKEFEIIDFFLGDALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 159
[Close]
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS2_SCHPO (40S ribosomal protein S2 OS=Schizosaccharomyces pombe GN=rps2 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.003e-43
Identity = 83/114 (72.81%), Postives = 103/114 (90.35%), Query Frame = 2 
Query:  164 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGT 505
            +WVPVTKLGRLV+ GKI+S+E+IYL+SLPIKEYQI+D  +  +L DEVMK++PVQKQTRAGQRTRFKAFVV+GD+DGHVGLG+KC++EVATAIRGAII+ KLS++ + RG  GT
Sbjct:   33 EWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFLP-RLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGT 145
[Close]
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS2_RAT (40S ribosomal protein S2 OS=Rattus norvegicus GN=Rps2 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.146e-43
Identity = 86/115 (74.78%), Postives = 101/115 (87.83%), Query Frame = 2 
Query:  164 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGTR 508
            +W+PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCS+EVATAIRGAIILAKLS++ V RG  G +
Sbjct:   59 EWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNK 173
[Close]
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS2_MOUSE (40S ribosomal protein S2 OS=Mus musculus GN=Rps2 PE=1 SV=3)

HSP 1 Score: 173.326 bits (438), Expect = 9.146e-43
Identity = 86/115 (74.78%), Postives = 101/115 (87.83%), Query Frame = 2 
Query:  164 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGTR 508
            +W+PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCS+EVATAIRGAIILAKLS++ V RG  G +
Sbjct:   59 EWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNK 173
The following BLAST results are available for this feature:
BLAST of EY686994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RS24_ARATH3.245e-4881.7440S ribosomal protein S2-4 OS=Arabidopsis thaliana... [more]
RS23_ARATH1.044e-4682.6140S ribosomal protein S2-3 OS=Arabidopsis thaliana... [more]
RS22_ARATH1.044e-4682.6140S ribosomal protein S2-2 OS=Arabidopsis thaliana... [more]
RS21_ARATH1.044e-4682.6140S ribosomal protein S2-1 OS=Arabidopsis thaliana... [more]
RS2_DROME6.767e-4678.2640S ribosomal protein S2 OS=Drosophila melanogaste... [more]
RS2_ICTPU2.407e-4375.6540S ribosomal protein S2 OS=Ictalurus punctatus GN... [more]
RS2_URECA3.143e-4375.6540S ribosomal protein S2 OS=Urechis caupo GN=RPS2 ... [more]
RS2_SCHPO7.003e-4372.8140S ribosomal protein S2 OS=Schizosaccharomyces po... [more]
RS2_RAT9.146e-4374.7840S ribosomal protein S2 OS=Rattus norvegicus GN=R... [more]
RS2_MOUSE9.146e-4374.7840S ribosomal protein S2 OS=Mus musculus GN=Rps2 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-031-G05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY686994 ID=EY686994; Name=EY686994; organism=Citrus sinensis; type=EST; length=638bp
CCACGCGTCCGCCTAGCTTCAACCCTAAACACACAAGAACAAAACCATGG
CTGAACGAGGTGGCGAGCGCGGTGCATTCGGACGCGGCTTCGGCCGTGGT
GGACGGGGCGACCGTGGAGGCCCACGTGGCCGTCGCCGCGCTGGACGCAG
AGAGGAAGAAGAGAAGTGGGTCCCAGTCACGAAACTCGGCCGTCTGGTGA
GAGAAGGCAAGATCAGGAGCCTCGAGCAAATCTACCTCCACTCGCTCCCA
ATCAAGGAGTATCAAATCATCGACACGCTTATCGGCCACAAATTGAAGGA
CGAGGTCATGAAGATCATGCCGGTGCAGAAACAGACACGTGCCGGTCAGA
GGACGAGGTTCAAGGCCTTCGTCGTCGTCGGTGACACGGACGGCCACGTG
GGTCTTGGCGTTAAGTGCTCCCAAGAGGTTGCCACTGCCATCCGTGGCGC
TATCATATTGGCGAAGCTGTCGGTGCTTTATGTTGAACGGGGGTCTCGGG
GTACAAGATGTCGAGAGGCGAGCTCGGTCGCGGGCGTCGTGTTTGGCGGG
GGCGCGAGGTGTGGGGTGCGGGTGGTGTTATTTTTTGTGCGCGGCAGGGA
CTGGCGCGCGTGCCAGGGTTGTGGTATGCGTGTCGGCC
back to top