EY685419

Overview
NameEY685419
Unique NameEY685419
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length978
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685419 vs. ExPASy Swiss-Prot
Match: ACBP2_ARATH (Acyl-CoA-binding domain-containing protein 2 OS=Arabidopsis thaliana GN=ACBP2 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 6.856e-37
Identity = 69/90 (76.67%), Postives = 78/90 (86.67%), Query Frame = 2
Query:    2 EGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWMLHAAKGTD 271
            EGR PLHWA+DRGHLNI+++LV KNADVNAKDNEGQTPLHYAVVCDREAIA+FLVKQNA+   KD DGNSP  +CESDWPW+  +AK  D
Sbjct:  265 EGRTPLHWAIDRGHLNIAKVLVDKNADVNAKDNEGQTPLHYAVVCDREAIAEFLVKQNANTAAKDEDGNSPLDLCESDWPWIRDSAKQAD 354          
BLAST of EY685419 vs. ExPASy Swiss-Prot
Match: ACBP1_ARATH (Acyl-CoA-binding domain-containing protein 1 OS=Arabidopsis thaliana GN=ACBP1 PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 4.599e-33
Identity = 62/82 (75.61%), Postives = 71/82 (86.59%), Query Frame = 2
Query:    2 EGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWM 247
            EGR PLHWA+DRGHLN++E LV KNADVNAKDNEGQT LHYAVVC+REA+A+FLVKQ AD  +KD DGNSP  +CES+W WM
Sbjct:  250 EGRTPLHWAIDRGHLNVAEALVDKNADVNAKDNEGQTSLHYAVVCEREALAEFLVKQKADTTIKDEDGNSPLDLCESEWSWM 331          
BLAST of EY685419 vs. ExPASy Swiss-Prot
Match: ACBD6_DANRE (Acyl-CoA-binding domain-containing protein 6 OS=Danio rerio GN=acbd6 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.293e-16
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 2
Query:    2 EGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCES 232
            EGRA LHWA DRGH ++  LL+  NAD+N++D+EGQT LHYA  C+   I + L+K  AD  +KD +G+ P  V ES
Sbjct:  209 EGRALLHWACDRGHKDLVSLLLQNNADINSQDDEGQTALHYASACEFAEIVELLLKAGADPSIKDQEGSLPEEVTES 285          
BLAST of EY685419 vs. ExPASy Swiss-Prot
Match: ACBD6_XENTR (Acyl-CoA-binding domain-containing protein 6 OS=Xenopus tropicalis GN=acbd6 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.661e-14
Identity = 37/77 (48.05%), Postives = 47/77 (61.04%), Query Frame = 2
Query:    2 EGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCES 232
            EGR  LHWA DRGH  +  +L+  NA +N +D+EGQTPLHYA  C+   I   L+   AD  + DNDG  P  V +S
Sbjct:  182 EGRCLLHWACDRGHTQLVSVLLFHNAHINMQDSEGQTPLHYASACEFPDIVDLLLDHGADPSLVDNDGFQPHEVTDS 258          
BLAST of EY685419 vs. ExPASy Swiss-Prot
Match: ACBD6_XENLA (Acyl-CoA-binding domain-containing protein 6 OS=Xenopus laevis GN=acbd6 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.781e-14
Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = 2
Query:    2 EGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCES 232
            EGR+ LHWA DRGH  +  +++  NA +N +D+EGQTPLHYA  C+   I   L+   AD  + DNDG  P  V +S
Sbjct:  182 EGRSLLHWACDRGHTQLVSVILFHNAHINMQDSEGQTPLHYASACEFPDIVDLLLDHGADPSLVDNDGFQPHEVTDS 258          
BLAST of EY685419 vs. ExPASy Swiss-Prot
Match: ACBD6_HUMAN (Acyl-CoA-binding domain-containing protein 6 OS=Homo sapiens GN=ACBD6 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.373e-13
Identity = 35/71 (49.30%), Postives = 46/71 (64.79%), Query Frame = 2
Query:    2 EGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSP 214
            EGRA LHWA DRGH  +  +L+   AD+N +DNEGQT LHYA  C+   I + L++  AD  ++D DG  P
Sbjct:  191 EGRALLHWACDRGHKELVTVLLQHRADINCQDNEGQTALHYASACEFLDIVELLLQSGADPTLRDQDGCLP 261          
BLAST of EY685419 vs. ExPASy Swiss-Prot
Match: ACBD6_RAT (Acyl-CoA-binding domain-containing protein 6 OS=Rattus norvegicus GN=Acbd6 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.047e-13
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 2
Query:    2 EGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSP 214
            EGRA LHWA DRGH  + ++L+   A +N +DNEGQT LHYA  C+   I + L++  AD  ++D DG  P
Sbjct:  191 EGRALLHWACDRGHKELVKVLLQCEAGINCQDNEGQTALHYAAACEFSDIVELLLQSGADPTLRDQDGCLP 261          
BLAST of EY685419 vs. ExPASy Swiss-Prot
Match: ACBD6_BOVIN (Acyl-CoA-binding domain-containing protein 6 OS=Bos taurus GN=ACBD6 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.286e-13
Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 2
Query:    2 EGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSP 214
            EGR  LHWA DRGH  +  +L+   AD+N +DNEGQT LHYA  C+   I + L++  AD  ++D DG  P
Sbjct:  191 EGRTLLHWACDRGHKELVTVLLQYRADINCQDNEGQTALHYAAACEFLDIVELLLQSGADPTLRDQDGCLP 261          
BLAST of EY685419 vs. ExPASy Swiss-Prot
Match: ACBD6_MOUSE (Acyl-CoA-binding domain-containing protein 6 OS=Mus musculus GN=Acbd6 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 6.904e-13
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 2
Query:    2 EGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSP 214
            EGRA LHWA DRGH  + ++L+   A +N +DNEGQT LHYA  C+   I + L++  AD  ++D DG  P
Sbjct:  191 EGRALLHWACDRGHKELVKVLLQYEAGINCQDNEGQTALHYAAACEFLDIVELLLQSGADPTLRDQDGCLP 261          
BLAST of EY685419 vs. ExPASy Swiss-Prot
Match: ACBD6_DICDI (Acyl-CoA-binding domain-containing protein 6 homolog OS=Dictyostelium discoideum GN=acbd6 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.178e-12
Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = 2
Query:    2 EGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNA-DIGMKDNDGNSPCHVCES 232
            +GR  L WA DRG+  I++LL+   ++VN +D EG TPLHYAVVCD+  I + L+ Q++ D  +KDN  + P    +S
Sbjct:  200 DGRTALIWACDRGYFEIAKLLIENGSNVNVQDGEGMTPLHYAVVCDQFEICKLLLSQSSIDKSIKDNSDSIPSDFIDS 277          
The following BLAST results are available for this feature:
BLAST of EY685419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
ACBP2_ARATH6.856e-3776.67Acyl-CoA-binding domain-containing protein 2 OS=Ar... [more]
ACBP1_ARATH4.599e-3375.61Acyl-CoA-binding domain-containing protein 1 OS=Ar... [more]
ACBD6_DANRE2.293e-1651.95Acyl-CoA-binding domain-containing protein 6 OS=Da... [more]
ACBD6_XENTR3.661e-1448.05Acyl-CoA-binding domain-containing protein 6 OS=Xe... [more]
ACBD6_XENLA4.781e-1446.75Acyl-CoA-binding domain-containing protein 6 OS=Xe... [more]
ACBD6_HUMAN2.373e-1349.30Acyl-CoA-binding domain-containing protein 6 OS=Ho... [more]
ACBD6_RAT4.047e-1347.89Acyl-CoA-binding domain-containing protein 6 OS=Ra... [more]
ACBD6_BOVIN5.286e-1347.89Acyl-CoA-binding domain-containing protein 6 OS=Bo... [more]
ACBD6_MOUSE6.904e-1347.89Acyl-CoA-binding domain-containing protein 6 OS=Mu... [more]
ACBD6_DICDI1.178e-1244.87Acyl-CoA-binding domain-containing protein 6 homol... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-019-A06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685419 ID=EY685419; Name=EY685419; organism=Citrus sinensis; type=EST; length=978bp
TGAGGGTCGTGCTCCATTGCATTGGGCTGTAGATCGTGGACACCTGAACA
TCTCTGAACTACTTGTTAGCAAGAATGCTGATGTAAACGCCAAGGACAAT
GAAGGACAAACTCCATTGCATTATGCTGTTGTATGTGATAGGGAAGCCAT
TGCTCAGTTTCTTGTGAAGCAAAATGCAGATATAGGCATGAAGGATAATG
ATGGCAATTCTCCTTGTCATGTCTGTGAGTCGGACTGGCCATGGATGCTA
CATGCTGCTAAAGGGACTGACTGATGGTTTGTTACATTGGCTTAAGTATT
TCTTGACAAATTCTGTGTGGTTGTACATGGCAGTATATAACCCTTTAACC
TCTTCTAATCGTAATGTTATATTATTAATATAGGGTAATATTTTCTCAGG
AGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAACAAAAAGAAAAAAAAAAAACTGAAACACGCCTACAA
GGGCCTAAGAAGATCACTCAGGACCGGCAACTTCAGTCGACTGGAATCCC
GTGCGACCTCGAGGAAGAGTGCGGGGCTTGTGGGTAGGCCTGAGGTTACT
GCGTCTATCTCGGATGCGAACCACCTGTCTCATGCAGAGAAAAGCGAGGA
GAGAGGCCCCGGCCCAACCTGCCTTTGCCGTGACCCCATCCCATAAAAGA
CGTGAAGATGCGAAACACGGCCCTCGCCTCGGCTAGGCGCAGTCGGACGA
GGAAGCGGGTGTCAAGCTCGAGAGGGGCTGGAAACACGGAGCGGGGCGAC
GGGCCCCGGACCGCGCACGGGTGTACGGTGCTGACGGCATGAACGGACAA
ACCCCATACTACCCGCCAGGGCACCGCATGGGAGGCGTCCTCGCTGCAAC
CGAACACCGCGCATACCGCGCTCCCACCGCGGACGGCCGACGGAACGCGA
CGGATTGCGAAAAAGCAGTAGGTACGAA
back to top