EY684818

Overview
NameEY684818
Unique NameEY684818
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length964
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684818_ssr588 microsatellite EY684818_ssr588:588..599. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY684818 vs. ExPASy Swiss-Prot
Match: IAA30_ORYSJ (Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 4.059e-34
Identity = 67/88 (76.14%), Postives = 79/88 (89.77%), Query Frame = 3
Query:   12 KMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNRT 275
            KMFS FTIG C SHG+   +G++ES++ DLL+GSEYV TYED+DGDWMLVGDVPW+MF E+C+RLRIMKGSEAIGLAPRAMEKCKNR+
Sbjct:  193 KMFSSFTIGNCGSHGV---NGMNESKIADLLNGSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKNRS 277          
BLAST of EY684818 vs. ExPASy Swiss-Prot
Match: IAA8_ARATH (Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.015e-33
Identity = 62/87 (71.26%), Postives = 78/87 (89.66%), Query Frame = 3
Query:   12 KMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNR 272
            KMFSCFT+GQC  HG  G++ +SE +L DLLHGSE+VLTYED+DGDWMLVGDVPW++FTETC++L+IMKGS++IGLAP A+EK KN+
Sbjct:  232 KMFSCFTLGQCGLHGAQGRERMSEIKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEIFTETCQKLKIMKGSDSIGLAPGAVEKSKNK 318          
BLAST of EY684818 vs. ExPASy Swiss-Prot
Match: IAA27_ARATH (Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.015e-33
Identity = 66/87 (75.86%), Postives = 76/87 (87.36%), Query Frame = 3
Query:   12 KMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNR 272
            KMFSCFTIGQ  SHG  G+DGL+ESRL DLL GSEYV+TYED+D DWMLVGDVPW+MF  +C++LRIMK SEAIGLAPR MEKC++R
Sbjct:  218 KMFSCFTIGQFGSHGGCGRDGLNESRLTDLLRGSEYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIMKSSEAIGLAPRVMEKCRSR 304          
BLAST of EY684818 vs. ExPASy Swiss-Prot
Match: IAA21_ORYSJ (Auxin-responsive protein IAA21 OS=Oryza sativa subsp. japonica GN=IAA21 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.962e-32
Identity = 63/87 (72.41%), Postives = 76/87 (87.36%), Query Frame = 3
Query:   12 KMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNR 272
            KMFSCFT+G  +S+G  G+DGLS+ RLMDL +G+E VLTYED+D DWMLVGDVPW MFT++CRRLRIMKGS+A+GLAPRA +K KNR
Sbjct:  179 KMFSCFTVGHGESNGKSGRDGLSDCRLMDLKNGTELVLTYEDKDEDWMLVGDVPWRMFTDSCRRLRIMKGSDAVGLAPRATDKSKNR 265          
BLAST of EY684818 vs. ExPASy Swiss-Prot
Match: IAA16_ARATH (Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 2.085e-30
Identity = 61/88 (69.32%), Postives = 77/88 (87.50%), Query Frame = 3
Query:   12 KMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNRT 275
            KMFS FTIG     G+  +D ++ES+L+DLL+GS+YV TYED+DGDWMLVGDVPW+MF ++C+R+RIMKGSEAIGLAPRA+EKCKNR+
Sbjct:  151 KMFSSFTIGNYGPQGM--KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAPRALEKCKNRS 236          
BLAST of EY684818 vs. ExPASy Swiss-Prot
Match: IAA9_ARATH (Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.765e-29
Identity = 60/89 (67.42%), Postives = 75/89 (84.27%), Query Frame = 3
Query:   12 KMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGL--APRAMEKCKNR 272
            KMF+ FT+GQC S+G  G+D LSE++L DLL+G +YVLTYED+DGDWMLVGDVPW+MF + C++L+IMKG +AIGL  APRAMEK K R
Sbjct:  249 KMFTTFTLGQCGSNGAAGKDMLSETKLKDLLNGKDYVLTYEDKDGDWMLVGDVPWEMFIDVCKKLKIMKGCDAIGLAAAPRAMEKSKMR 337          
BLAST of EY684818 vs. ExPASy Swiss-Prot
Match: AUX28_SOYBN (Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.305e-29
Identity = 62/90 (68.89%), Postives = 75/90 (83.33%), Query Frame = 3
Query:   12 KMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAI--GLAPRAMEKCKNRT 275
            KMFS FT G C+S G+  +D ++ES+L DLL+ S+YV TYED+DGDWMLVGDVPW+MF E+C+RLRIMKG EAI  GLAPRAM KCKNR+
Sbjct:  156 KMFSSFTFGNCESQGM--KDFMNESKLNDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLGLAPRAMAKCKNRS 243          
BLAST of EY684818 vs. ExPASy Swiss-Prot
Match: IAA14_ARATH (Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.951e-28
Identity = 61/88 (69.32%), Postives = 74/88 (84.09%), Query Frame = 3
Query:   12 KMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNRT 275
            KMFS FT+G   + G+   D ++ES++MDLL+ SEYV +YED+DGDWMLVGDVPW MF E+C+RLRIMKGSEAIGLAPRAMEK KNR+
Sbjct:  143 KMFSSFTMGSYGAQGMI--DFMNESKVMDLLNSSEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPRAMEKFKNRS 228          
BLAST of EY684818 vs. ExPASy Swiss-Prot
Match: IAA7_ARATH (Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.549e-28
Identity = 61/89 (68.54%), Postives = 76/89 (85.39%), Query Frame = 3
Query:   12 KMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEK-CKNRT 275
            KMFS FT+G   + G+   D ++ES+LM+LL+ SEYV +YED+DGDWMLVGDVPW+MF E+C+RLRIMKGSEA+GLAPRAMEK CKNR+
Sbjct:  157 KMFSSFTMGNYGAQGMI--DFMNESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAVGLAPRAMEKYCKNRS 243          
BLAST of EY684818 vs. ExPASy Swiss-Prot
Match: IAA17_ARATH (Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 9.064e-26
Identity = 57/90 (63.33%), Postives = 74/90 (82.22%), Query Frame = 3
Query:   15 MFSCFTIGQCDSHGLPGQDGL----SESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNR 272
            MFS FT+G+   HG  G++G+    +E +LMDL++  +YV +YED+DGDWMLVGDVPW MF +TC+RLR+MKGS+AIGLAPRAMEKCK+R
Sbjct:  144 MFSSFTMGK---HG--GEEGMIDFMNERKLMDLVNSWDYVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLMKGSDAIGLAPRAMEKCKSR 228          
The following BLAST results are available for this feature:
BLAST of EY684818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
IAA30_ORYSJ4.059e-3476.14Auxin-responsive protein IAA30 OS=Oryza sativa sub... [more]
IAA8_ARATH2.015e-3371.26Auxin-responsive protein IAA8 OS=Arabidopsis thali... [more]
IAA27_ARATH2.015e-3375.86Auxin-responsive protein IAA27 OS=Arabidopsis thal... [more]
IAA21_ORYSJ4.962e-3272.41Auxin-responsive protein IAA21 OS=Oryza sativa sub... [more]
IAA16_ARATH2.085e-3069.32Auxin-responsive protein IAA16 OS=Arabidopsis thal... [more]
IAA9_ARATH1.765e-2967.42Auxin-responsive protein IAA9 OS=Arabidopsis thali... [more]
AUX28_SOYBN2.305e-2968.89Auxin-induced protein AUX28 OS=Glycine max GN=AUX2... [more]
IAA14_ARATH1.951e-2869.32Auxin-responsive protein IAA14 OS=Arabidopsis thal... [more]
IAA7_ARATH2.549e-2868.54Auxin-responsive protein IAA7 OS=Arabidopsis thali... [more]
IAA17_ARATH9.064e-2663.33Auxin-responsive protein IAA17 OS=Arabidopsis thal... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-004-A10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684818 ID=EY684818; Name=EY684818; organism=Citrus sinensis; type=EST; length=964bp
CCACGCGTCCGAAGATGTTCAGCTGCTTTACCATTGGGCAATGTGATTCT
CATGGTCTTCCGGGGCAAGACGGCCTAAGTGAGAGTCGTCTGATGGATCT
TCTCCATGGTTCTGAATATGTGCTTACATATGAAGACAGGGATGGTGACT
GGATGCTTGTTGGTGATGTCCCTTGGGATATGTTCACTGAGACGTGTAGA
AGACTTCGCATCATGAAAGGTTCAGAGGCTATTGGACTGGCTCCAAGGGC
CATGGAGAAGTGCAAGAACCGAACTTAGTGTCGCAAATATCTTGAAAGAC
TTAAAAAGGGAGAAAATTTGTTTTTTTCAGAATCCAAACACGTGAAAAGA
TGTTAGGCATTTTGTTCAAGGACCCTATTATTATATAAATGTTATCAAAT
ATCATAAGGTTTGCTGTATTTAATTACTTAATATGGGGAAAACATCCCTC
TACACAAAGATAGCACTGCAGACATATCCGTTCTACGTTTGTTTTAACAT
CTTATTTTGTTCCTCTTCACTTTTCCGGCGACCTTTTCTAGCAATCCCCC
ACACACCCGCCCCAGCCCCAATCCCCCGGCCCACGTGCGCCGCCGCCGCC
AAAAGCACGACAACCGAAAGGACCACCAAAACACCCAACACAAACAACCA
AAACACCAGCGAACACCACGAACCCAAGAACCACACCGCAGCAACAAAGA
ACCCACGCACACACGGGACAGTCGAGAACACGCCAGAGCTCAACAAAGGC
AGCCGCGAACAGAGCGCACCCCCCCCACCGCAAGAACTCGACGAGACCAG
GGCGCCGCCAACCCCAACCACAGCGACAGCGCAGCCCACCAGCGGGACCC
AACAAGAGAGAACCAGACCGACACGACAGCAGCCACAACAACACCAACAT
AGACTCTGACGATTATGCGGTACTGAGCACAACACCGAACGGCGCGCCAC
GGACACCACTGGCA
back to top