EY684808 | Citrus Genome Database

Overview


Name	EY684808
Unique Name	EY684808
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	873

Libraries


Library Name	Type
Sweet orange bark, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.365e-49
Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = 1

Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            MSNEYDYLFKLLLIGDSSVGKSCLLLRFADD+Y+DSYISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD T
Sbjct:    1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCT 91

HSP 2 Score: 40.4318 bits (93), Expect = 1.365e-49
Identity = 17/26 (65.38%), Postives = 22/26 (84.62%), Query Frame = 2

Query:  380 EMDSFDNVTHWLNEIDR*ANDSECKV 457
            EM+SF+NV  WL+EIDR AN+S CK+
Sbjct:   92 EMESFNNVKQWLSEIDRYANESVCKL 117

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 2.517e-48
Identity = 85/91 (93.41%), Postives = 90/91 (98.90%), Query Frame = 1

Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            MSNE+DYLFKLLLIGDSSVGKSC LLRFADDSYVDSYISTIGVDFKIRTVE++GKT+KLQIWDTAGQERFRTITSSYYRGAHGIIIVYD+T
Sbjct:    1 MSNEFDYLFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDIT 91

HSP 2 Score: 36.5798 bits (83), Expect = 2.517e-48
Identity = 17/31 (54.84%), Postives = 22/31 (70.97%), Query Frame = 2

Query:  380 EMDSFDNVTHWLNEIDR*ANDSECKVSTWGK 472
            +M+SF+NV  WL+EIDR ANDS  K+    K
Sbjct:   92 DMESFNNVKQWLDEIDRYANDSVRKLLVGNK 122

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.028e-46
Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 1

Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADDSY+DSYISTIGVDFKIRTVE DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 91

HSP 2 Score: 33.8834 bits (76), Expect = 1.028e-46
Identity = 15/35 (42.86%), Postives = 23/35 (65.71%), Query Frame = 2

Query:  380 EMDSFDNVTHWLNEIDR*ANDSECKVSTWGKKAIS 484
            + +SF+NV  WLNEIDR A+D+  K+    K  ++
Sbjct:   92 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLT 126

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.453e-45
Identity = 84/91 (92.31%), Postives = 88/91 (96.70%), Query Frame = 1

Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADDSY++SYISTIGVDFKIRTVE DGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVT
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 91

HSP 2 Score: 31.9574 bits (71), Expect = 1.453e-45
Identity = 14/31 (45.16%), Postives = 21/31 (67.74%), Query Frame = 2

Query:  380 EMDSFDNVTHWLNEIDR*ANDSECKVSTWGK 472
            + +SF+NV  WLNEIDR A+++  K+    K
Sbjct:   92 DQESFNNVKQWLNEIDRYASENVNKLLVGNK 122

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 173.326 bits (438), Expect = 1.893e-45
Identity = 85/91 (93.41%), Postives = 88/91 (96.70%), Query Frame = 1

Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+ EYDYLFKLLLIGDS VGKSCLLLRF+DDSYV+SYISTIGVDFKIRTVE DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 91

HSP 2 Score: 31.187 bits (69), Expect = 1.893e-45
Identity = 14/33 (42.42%), Postives = 22/33 (66.67%), Query Frame = 2

Query:  386 DSFDNVTHWLNEIDR*ANDSECKVSTWGKKAIS 484
            +SF+NV  WL+EIDR A+D+  K+    K  ++
Sbjct:   94 ESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLT 126

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.467e-45
Identity = 83/91 (91.21%), Postives = 87/91 (95.60%), Query Frame = 1

Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRTVELDGK IKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVT
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 91

HSP 2 Score: 32.3426 bits (72), Expect = 2.467e-45
Identity = 14/35 (40.00%), Postives = 23/35 (65.71%), Query Frame = 2

Query:  380 EMDSFDNVTHWLNEIDR*ANDSECKVSTWGKKAIS 484
            + +SF+NV  WLNEIDR A+++  K+    K  ++
Sbjct:   92 DQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLT 126

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: YPT1_NEUCR (GTP-binding protein ypt1 OS=Neurospora crassa GN=ypt-1 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.191e-45
Identity = 81/91 (89.01%), Postives = 87/91 (95.60%), Query Frame = 1

Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRT+ELDGKT+KLQIWDTAGQERFRTITSSYYRGAHGI +VYDVT
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGICVVYDVT 91

HSP 2 Score: 32.3426 bits (72), Expect = 4.191e-45
Identity = 15/31 (48.39%), Postives = 19/31 (61.29%), Query Frame = 2

Query:  380 EMDSFDNVTHWLNEIDR*ANDSECKVSTWGK 472
            +MDSF+NV  WL EIDR A +   K+    K
Sbjct:   92 DMDSFNNVKQWLQEIDRYATEGVNKLLVGNK 122

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 173.326 bits (438), Expect = 5.462e-45
Identity = 83/91 (91.21%), Postives = 88/91 (96.70%), Query Frame = 1

Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRT+ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVT
Sbjct:    4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 94

HSP 2 Score: 29.6462 bits (65), Expect = 5.462e-45
Identity = 13/31 (41.94%), Postives = 20/31 (64.52%), Query Frame = 2

Query:  380 EMDSFDNVTHWLNEIDR*ANDSECKVSTWGK 472
            + +SF+NV  WL EIDR A+++  K+    K
Sbjct:   95 DQESFNNVKQWLQEIDRYASENVNKLLVGNK 125

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 173.326 bits (438), Expect = 5.462e-45
Identity = 83/91 (91.21%), Postives = 88/91 (96.70%), Query Frame = 1

Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRT+ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVT
Sbjct:    4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 94

HSP 2 Score: 29.6462 bits (65), Expect = 5.462e-45
Identity = 13/31 (41.94%), Postives = 20/31 (64.52%), Query Frame = 2

Query:  380 EMDSFDNVTHWLNEIDR*ANDSECKVSTWGK 472
            + +SF+NV  WL EIDR A+++  K+    K
Sbjct:   95 DQESFNNVKQWLQEIDRYASENVNKLLVGNK 125

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 173.326 bits (438), Expect = 5.462e-45
Identity = 83/91 (91.21%), Postives = 88/91 (96.70%), Query Frame = 1

Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRT+ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVT
Sbjct:    4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 94

HSP 2 Score: 29.6462 bits (65), Expect = 5.462e-45
Identity = 13/31 (41.94%), Postives = 20/31 (64.52%), Query Frame = 2

Query:  380 EMDSFDNVTHWLNEIDR*ANDSECKVSTWGK 472
            + +SF+NV  WL EIDR A+++  K+    K
Sbjct:   95 DQESFNNVKQWLQEIDRYASENVNKLLVGNK 125

The following BLAST results are available for this feature:

BLAST of EY684808 vs. ExPASy Swiss-Prot

BLAST of EY684808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397


Match Name	E-value	Identity	Description
RABD1_ARATH	1.365e-49	94.51	Ras-related protein RABD1 OS=Arabidopsis thaliana ...	[more]
YPTM1_MAIZE	2.517e-48	93.41	GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=...	[more]
YPTM2_MAIZE	1.028e-46	94.51	GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=...	[more]
RIC1_ORYSJ	1.453e-45	92.31	Ras-related protein RIC1 OS=Oryza sativa subsp. ja...	[more]
RBD2A_ARATH	1.893e-45	93.41	Ras-related protein RABD2A OS=Arabidopsis thaliana...	[more]
YPTC1_CHLRE	2.467e-45	91.21	GTP-binding protein YPTC1 OS=Chlamydomonas reinhar...	[more]
YPT1_NEUCR	4.191e-45	89.01	GTP-binding protein ypt1 OS=Neurospora crassa GN=y...	[more]
RAB1A_RAT	5.462e-45	91.21	Ras-related protein Rab-1A OS=Rattus norvegicus GN...	[more]
RAB1A_MOUSE	5.462e-45	91.21	Ras-related protein Rab-1A OS=Mus musculus GN=Rab1...	[more]
RAB1A_HUMAN	5.462e-45	91.21	Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C2-003-003-H09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY684808 ID=EY684808; Name=EY684808; organism=Citrus sinensis; type=EST; length=873bp
CGACACAGCGCAAACAAACTTTCCCTTTCATTTTCTTTTTCTCTTTCTCG
CTCTCCAAACAGGGCAAACGGACCGTCGCAAGATTCTTTACTTCCATCCA
AAATCATGAGCAACGAATACGACTATCTGTTCAAGCTGTTGCTTATCGGA
GACTCGTCCGTCGGGAAGTCCTGCCTGCTGCTCCGATTTGCTGATGATTC
TTATGTCGACAGCTACATCAGTACCATTGGAGTTGATTTTAAAATAAGAA
CTGTGGAGCTGGATGGGAAGACGATCAAACTGCAGATTTGGGACACTGCT
GGACAGGAGCGATTCAGGACTATAACTAGCAGTTATTACCGAGGAGCCCA
TGGAATCATAATTGTCTATGACGTAACCTGAGATGGACAGCTTCGATAAT
GTCACGCACTGGTTGAATGAGATTGACAGATAGGCAAATGACAGTGAATG
CAAAGTATCTACGTGGGGAAAAAAGGCGATTAGTTGAGAACACGAGGGAC
AGACCGCACCAGCACCCGGGCACTAGCCAGACCCACTGCGCGCGCCATCC
CCTGGTAAAGGAACGCCGAAAATGACAGCACGGGGGGGACGGGGCTCGCC
GCGGGACTCGTGCCCACGGCCACGGGGGCGACGGCACGGGCGCCAACCGC
GGGACCGAGGGACAGAGCGAGACGACAGAGAAGGGCGAGCGCCCACCAGA
ACAAGCGACGACCGGCAGCCCCCGCCCACACAACCCCGGTAGAACAGACG
ACAGACAGACGACCAGGGCAACGACGAAACCCGAACGAAAGATGAAGGCA
GCACAAACACACCAACCTTAACCACAGCACCAATACGCACCAAAGTACAA
CCAAGACAACAGAGGGCAACAGC