EY744817

Overview
NameEY744817
Unique NameEY744817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1010
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY744817_ssr660 microsatellite EY744817_ssr660:660..675. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: RH20_ARATH (DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana GN=RH20 PE=1 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 8.448e-70
Identity = 128/166 (77.11%), Postives = 145/166 (87.35%), Query Frame = 3
Query:    9 PRKLDLPPLTPFEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGVPQG 506
            PRKLDL  LTPFE NFYVESP+VAAM+            ITVEG D+PKPVKSFRDVGFPDYV++E+ KAGF EPTPIQ+QGWPMA+KGRDLIGIAETGSGKTL+YLLPAIVHVNAQP L  G+GPIVLVLAPTRELAVQIQQE++KFG+SS+IK+TC+YGGVP+G
Sbjct:   48 PRKLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKG 213          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: RH20_ORYSJ (DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica GN=Os01g0197200 PE=3 SV=2)

HSP 1 Score: 256.144 bits (653), Expect = 2.301e-67
Identity = 127/162 (78.40%), Postives = 139/162 (85.80%), Query Frame = 3
Query:   21 DLPPLTPFEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGVPQG 506
            DL  L  FE NFYVESPSVA M+            ITVEG DVPKPV+ FRDVGFP+YV+QEI+KAGF EPTPIQ+QGWPMAL+GRDLIGIAETGSGKTLAYLLPAIVHVNAQP L PG+GPIVLVLAPTRELAVQIQQE+TKFGASS+IKSTC+YGGVP+G
Sbjct:   44 DLDGLPRFEKNFYVESPSVAGMTEEEVEAYRRRREITVEGRDVPKPVREFRDVGFPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILAPGDGPIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKG 205          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: RH30_ORYSJ (DEAD-box ATP-dependent RNA helicase 30 OS=Oryza sativa subsp. japonica GN=Os01g0911100 PE=2 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 4.349e-58
Identity = 110/164 (67.07%), Postives = 128/164 (78.05%), Query Frame = 3
Query:   15 KLDLPPLTPFEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGVPQG 506
            K D   L PFE NFYVE P+V AMS            ITVEG DVPKPV+ F++  FPDY MQ I+K+GF EPTPIQ+QGWPMALKGRD+IGIA+TGSGKTL+YLLP +VHV AQP L  G+GPIVL+LAPTRELAVQIQQES KFG+ S+ +STC+YGG P+G
Sbjct:  202 KPDFRSLIPFEKNFYVECPAVQAMSDMDVSQYRRQRDITVEGHDVPKPVRYFQEANFPDYCMQAIAKSGFVEPTPIQSQGWPMALKGRDMIGIAQTGSGKTLSYLLPGLVHVGAQPRLEQGDGPIVLILAPTRELAVQIQQESGKFGSYSRTRSTCIYGGAPKG 365          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: RH30_ARATH (DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana GN=RH30 PE=2 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 5.316e-56
Identity = 107/158 (67.72%), Postives = 125/158 (79.11%), Query Frame = 3
Query:   33 LTPFEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGVPQG 506
            L  FE NFYVESP+V AM+            I+VEG DVPKP+K F+D  FPD +++ I+K GF EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA+VHV+AQP L   +GPIVL+LAPTRELAVQIQ+ES KFG  S ++STC+YGG P+G
Sbjct:  122 LVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKG 279          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DBP2_SCLS1 (ATP-dependent RNA helicase dbp2 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp2 PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 6.943e-56
Identity = 106/162 (65.43%), Postives = 124/162 (76.54%), Query Frame = 3
Query:   21 DLPPLTPFEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGVPQG 506
            DL  L  FE +FY E P VAA S            I V+GP++PKPV++F + GFP YVM E+   GF  PTPIQ+QGWPMAL GRD++GIAETGSGKTL Y LPAIVH+NAQP L PG+GPIVLVLAPTRELAVQIQQE TKFG SS+I++TC+YGGVP+G
Sbjct:  102 DLNTLPKFEKSFYKEDPVVAARSEEDVAKFRAQHNIAVQGPNIPKPVETFDEAGFPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKG 263          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DBP2_BOTFB (ATP-dependent RNA helicase dbp2 OS=Botryotinia fuckeliana (strain B05.10) GN=dbp2 PE=3 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 9.068e-56
Identity = 105/162 (64.81%), Postives = 124/162 (76.54%), Query Frame = 3
Query:   21 DLPPLTPFEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGVPQG 506
            DL  +  FE +FY E P VAA S            I V+GP++PKPV++F + GFP YVM E+   GF  PTPIQ+QGWPMAL GRD++GIAETGSGKTL Y LPAIVH+NAQP L PG+GPIVLVLAPTRELAVQIQQE TKFG SS+I++TC+YGGVP+G
Sbjct:   55 DLSTMPKFEKSFYKEDPVVAARSEEDVAKFRAQHNIAVQGPNIPKPVETFDEAGFPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKG 216          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DBP2_KLULA (ATP-dependent RNA helicase DBP2 OS=Kluyveromyces lactis GN=DBP2 PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.309e-54
Identity = 101/161 (62.73%), Postives = 123/161 (76.40%), Query Frame = 3
Query:   21 DLPPLTPFEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGVPQ 503
            +LP L  FE NFY E P VA MS            +T+ G DVPKP++SF + GFP YV+ E+ + GF +PT IQ QGWPMAL GRD+IG+A TGSGKTL+Y LP IVH+NAQP L PG+GPIVLVLAPTRELAVQIQ+E +KFGASS+I++TC+YGGVP+
Sbjct:   66 ELPNLPVFEKNFYQEHPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPK 226          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DBP2_AJECN (ATP-dependent RNA helicase DBP2 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=DBP2 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 6.499e-54
Identity = 102/162 (62.96%), Postives = 122/162 (75.31%), Query Frame = 3
Query:   21 DLPPLTPFEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGVPQG 506
            DL  +  FE +FY E P+V+  S            ITV+G +VP+PV++F + GFP YVM E+   GF  PT IQAQGWPMAL GRD++GIAETGSGKTL Y LPAIVH+NAQP L PG+GPIVLVLAPTRELAVQIQ E TKFG SS+I++TC+YGGVP+G
Sbjct:   78 DLSTMPKFEKSFYKEHPNVSQRSTHEVDAFRKEHEITVQGKNVPRPVETFDEAGFPQYVMSEVKAQGFARPTAIQAQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKG 239          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DBP2_CHAGB (ATP-dependent RNA helicase DBP2 OS=Chaetomium globosum GN=DBP2 PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 8.488e-54
Identity = 104/162 (64.20%), Postives = 122/162 (75.31%), Query Frame = 3
Query:   21 DLPPLTPFEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGVPQG 506
            DL  L  FE +FY E P+VAA S            +TV G +VP PV++F + GFP YVM E+   GF  PT IQ+QGWPMAL GRD++GIAETGSGKTL Y LPAIVH+NAQP L PG+GPIVLVLAPTRELAVQIQQE TKFG SS+I++TC+YGGVP+G
Sbjct:   89 DLDTLPKFEKSFYQEHPNVAARSQAEVDKFRRDHAMTVAGNNVPSPVETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKG 250          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DBP2_PICGU (ATP-dependent RNA helicase DBP2 OS=Pichia guilliermondii GN=DBP2 PE=3 SV=3)

HSP 1 Score: 210.69 bits (535), Expect = 1.108e-53
Identity = 101/162 (62.35%), Postives = 121/162 (74.69%), Query Frame = 3
Query:   21 DLPPLTPFEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGVPQG 506
            DL  L  FE NFY E P V+A S            +   G D+PKP+ SF + GFPDYV+ E+ + GF +PT IQ QGWPMAL GRD+IGIA TGSGKTL+Y LP+IVH+NAQP L PG+GPIVLVLAPTRELAVQIQQE +KFGASS+I++TC+YGG P+G
Sbjct:   78 DLDSLPKFEKNFYSEHPDVSARSESEVQSFRKEHDMKCVGTDIPKPITSFDEAGFPDYVLNEVKQQGFPKPTAIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVHINAQPLLGPGDGPIVLVLAPTRELAVQIQQECSKFGASSRIRNTCIYGGAPKG 239          
The following BLAST results are available for this feature:
BLAST of EY744817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH20_ARATH8.448e-7077.11DEAD-box ATP-dependent RNA helicase 20 OS=Arabidop... [more]
RH20_ORYSJ2.301e-6778.40DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sa... [more]
RH30_ORYSJ4.349e-5867.07DEAD-box ATP-dependent RNA helicase 30 OS=Oryza sa... [more]
RH30_ARATH5.316e-5667.72DEAD-box ATP-dependent RNA helicase 30 OS=Arabidop... [more]
DBP2_SCLS16.943e-5665.43ATP-dependent RNA helicase dbp2 OS=Sclerotinia scl... [more]
DBP2_BOTFB9.068e-5664.81ATP-dependent RNA helicase dbp2 OS=Botryotinia fuc... [more]
DBP2_KLULA1.309e-5462.73ATP-dependent RNA helicase DBP2 OS=Kluyveromyces l... [more]
DBP2_AJECN6.499e-5462.96ATP-dependent RNA helicase DBP2 OS=Ajellomyces cap... [more]
DBP2_CHAGB8.488e-5464.20ATP-dependent RNA helicase DBP2 OS=Chaetomium glob... [more]
DBP2_PICGU1.108e-5362.35ATP-dependent RNA helicase DBP2 OS=Pichia guillier... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-003-H06-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744817 ID=EY744817; Name=EY744817; organism=Citrus sinensis; type=EST; length=1010bp
CCACGCGTCCGAGGAAGTTGGATTTGCCCCCTTTGACTCCTTTTGAGATG
AACTTCTATGTTGAGTCCCCCTCAGTGGCTGCAATGTCGGAGAGGGAAGT
CGAGGAGTATCGACAGCAGAGGGAAATCACAGTTGAAGGTCCCGATGTTC
CAAAACCTGTCAAGAGTTTCCGTGATGTCGGTTTTCCAGATTATGTTATG
CAAGAAATATCAAAAGCTGGCTTTTTTGAACCCACACCTATACAAGCTCA
GGGATGGCCAATGGCTTTGAAAGGTCGTGATCTCATTGGAATTGCTGAAA
CAGGCTCAGGAAAAACTCTGGCTTATCTCTTGCCTGCTATTGTCCATGTT
AATGCCCAGCCATTTTTACCTCCTGGAAATGGCCCAATTGTGCTAGTTCT
AGCTCCAACTCGTGAACTTGCTGTTCAAATACAACAAGAATCTACTAAAT
TTGGTGCATCCTCACAGATTAAAAGTACGTGCCTCTATGGGGGAGTTCCA
CAGGGAACTCCAGTTCCTGATCCGCCCAAGGGTGCCCCCAGTGCCCCCCC
CCCCCCCCCGAGGGTCCCGGCCCCGGCGGACGCCCCTAACGCCCATCCAC
CCAAGCGCCCCTTCCCTTTCCCCCCGCCCCCGCTAACCCGATGNTNCCAC
CCCCACCCCCCCGCCCGCCCGCCCGCGCCCGCCCCGCCCCNCGTCGGNTN
CCAGGGCGTGAAACTCATGCAGTCGCGCCCGAGCCATAGNTNTNNNGTGG
GTNANGTTNGTNTNTCCGGGGTCCCATTCCCCCGGCCACACCCCCCCCCA
CACAGCCCCCCCCTCCCCAGCCCCAACCCCCCCCCCCACCCCTCCGACTG
CCCCCCCCCCACCCCCCCACACCCCAACACCACCCAGCCCCCGCCCCCGG
ACCGCCCCCCAGACCCGCGAGCTCACCAGACCCGCGCCGCACGATCGAAC
CAGTGCCCGGATAACGCACACGGCGACCCACCGGCGAGCCGGGGCAGCAC
GACGAGGGGA
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