EY679889

Overview
NameEY679889
Unique NameEY679889
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length941
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679889 vs. ExPASy Swiss-Prot
Match: PSAF_ARATH (Photosystem I reaction center subunit III, chloroplastic OS=Arabidopsis thaliana GN=PSAF PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.994e-42
Identity = 78/87 (89.66%), Postives = 85/87 (97.70%), Query Frame = 2
Query:    2 LPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKDV 262
            LPHLIV+GDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASR++FRGF WPVAAYREF+NG+L+ KDV
Sbjct:  135 LPHLIVNGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRIIFRGFIWPVAAYREFLNGDLIAKDV 221          
BLAST of EY679889 vs. ExPASy Swiss-Prot
Match: PSAF_HORVU (Photosystem I reaction center subunit III, chloroplastic OS=Hordeum vulgare GN=PSAF PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 1.538e-38
Identity = 73/86 (84.88%), Postives = 81/86 (94.19%), Query Frame = 2
Query:    2 LPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKD 259
            LPHLIVSGDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIA+SGEKKPAM+EIIIDV LA+R++ RGF WPVAAYRE +NG+LVV D
Sbjct:  145 LPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDD 230          
BLAST of EY679889 vs. ExPASy Swiss-Prot
Match: PSAF_FLATR (Photosystem I reaction center subunit III, chloroplastic OS=Flaveria trinervia GN=PSAF PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 2.008e-38
Identity = 72/83 (86.75%), Postives = 79/83 (95.18%), Query Frame = 2
Query:    2 LPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELV 250
            LPHLIVSGDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIAI  EKKP  KEIIIDVPLA++L+FRGFSWPVAAYRE++NGEL+
Sbjct:  146 LPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLATKLLFRGFSWPVAAYREYLNGELI 228          
BLAST of EY679889 vs. ExPASy Swiss-Prot
Match: PSAF_SPIOL (Photosystem I reaction center subunit III, chloroplastic OS=Spinacia oleracea GN=PSAF PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.426e-38
Identity = 74/83 (89.16%), Postives = 77/83 (92.77%), Query Frame = 2
Query:    2 LPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELV 250
            LPHLIVSGDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIAI  EKKP  KEIIIDVPLAS L+FRGFSWPVAAYRE +NGELV
Sbjct:  145 LPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLASSLLFRGFSWPVAAYRELLNGELV 227          
BLAST of EY679889 vs. ExPASy Swiss-Prot
Match: PSAF_SYNP6 (Photosystem I reaction center subunit III OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psaF PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 7.409e-25
Identity = 54/85 (63.53%), Postives = 65/85 (76.47%), Query Frame = 2
Query:    2 LPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVK 256
            LPHLIV G   H G+FI P LLFLYIAGWIGWVGRSYL AI  +K  A KEI+IDVPLA +    GF+WP+AA++EF +G+L+ K
Sbjct:   66 LPHLIVDGRLDHAGDFIIPSLLFLYIAGWIGWVGRSYLQAIKSDKDAAGKEIVIDVPLAVKFSLTGFAWPLAAFQEFSSGKLLAK 150          
BLAST of EY679889 vs. ExPASy Swiss-Prot
Match: PSAF_SYNY3 (Photosystem I reaction center subunit III OS=Synechocystis sp. (strain PCC 6803) GN=psaF PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.070e-23
Identity = 50/85 (58.82%), Postives = 64/85 (75.29%), Query Frame = 2
Query:    5 PHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKD 259
            PHLIV G   H G+F+ P +LFLYIAGWIGWVGRSYLI I   K P M+E++I+VPLA + +  GF WP+AA  E+ +G+LV+KD
Sbjct:   73 PHLIVDGRFTHAGDFLIPSILFLYIAGWIGWVGRSYLIEIRESKNPEMQEVVINVPLAIKKMLGGFLWPLAAVGEYTSGKLVMKD 157          
BLAST of EY679889 vs. ExPASy Swiss-Prot
Match: PSAF_GRATL (Photosystem I reaction center subunit III OS=Gracilaria tenuistipitata var. liui GN=psaF PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.113e-23
Identity = 53/89 (59.55%), Postives = 62/89 (69.66%), Query Frame = 2
Query:    2 LPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVV--KDV 262
            LPHLI  G   H GEF+ PG+LFLYI GWIGWVGR YL  IS   KP  KEII+DVPLA +    GF+WP+AA +E  +GELV   KD+
Sbjct:   94 LPHLITDGRWNHAGEFMIPGVLFLYITGWIGWVGRGYLRDISQTTKPTEKEIILDVPLALKYCLSGFTWPLAAIKELTSGELVADNKDI 182          
BLAST of EY679889 vs. ExPASy Swiss-Prot
Match: PSAF_PORYE (Photosystem I reaction center subunit III OS=Porphyra yezoensis GN=psaF PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.310e-23
Identity = 47/86 (54.65%), Postives = 64/86 (74.42%), Query Frame = 2
Query:    2 LPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKD 259
            LPHLI  G     G+F+ PGLLFLYI GWIGWVGR YL++++   KP  KEII+DVPLA + +  GF+WP+AA++EF +G+L+  +
Sbjct:   88 LPHLISDGRWSRAGDFVFPGLLFLYITGWIGWVGRGYLLSVAKTSKPTEKEIILDVPLAIKFMSSGFAWPLAAWQEFSSGQLIASN 173          
BLAST of EY679889 vs. ExPASy Swiss-Prot
Match: PSAF_PORPU (Photosystem I reaction center subunit III OS=Porphyra purpurea GN=psaF PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.934e-23
Identity = 47/83 (56.63%), Postives = 63/83 (75.90%), Query Frame = 2
Query:    2 LPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELV 250
            LPHLI  G     G+F+ PGLLFLYI GWIGWVGR YL++++   KP  KEII+DVPLA + +  GF+WP+AA++EF +G+L+
Sbjct:   92 LPHLISDGRWSRAGDFVFPGLLFLYITGWIGWVGRGYLLSVAKTSKPTEKEIILDVPLAVKFMSSGFAWPLAAWQEFSSGQLI 174          
BLAST of EY679889 vs. ExPASy Swiss-Prot
Match: PSAF_GUITH (Photosystem I reaction center subunit III OS=Guillardia theta GN=psaF PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.934e-23
Identity = 49/86 (56.98%), Postives = 60/86 (69.77%), Query Frame = 2
Query:    2 LPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKD 259
            LPHLI  G   H GEF+ PGL FLYIAGWIGWVGR+Y+   S   KP  KEIIIDVP+A   +  G+ WP AA++EF +G L+ K+
Sbjct:   90 LPHLIADGRWSHAGEFMVPGLFFLYIAGWIGWVGRNYVQFASQTDKPTEKEIIIDVPVALSFISTGYIWPFAAFKEFTSGNLIAKE 175          
The following BLAST results are available for this feature:
BLAST of EY679889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PSAF_ARATH2.994e-4289.66Photosystem I reaction center subunit III, chlorop... [more]
PSAF_HORVU1.538e-3884.88Photosystem I reaction center subunit III, chlorop... [more]
PSAF_FLATR2.008e-3886.75Photosystem I reaction center subunit III, chlorop... [more]
PSAF_SPIOL3.426e-3889.16Photosystem I reaction center subunit III, chlorop... [more]
PSAF_SYNP67.409e-2563.53Photosystem I reaction center subunit III OS=Synec... [more]
PSAF_SYNY31.070e-2358.82Photosystem I reaction center subunit III OS=Synec... [more]
PSAF_GRATL3.113e-2359.55Photosystem I reaction center subunit III OS=Graci... [more]
PSAF_PORYE5.310e-2354.65Photosystem I reaction center subunit III OS=Porph... [more]
PSAF_PORPU6.934e-2356.63Photosystem I reaction center subunit III OS=Porph... [more]
PSAF_GUITH6.934e-2356.98Photosystem I reaction center subunit III OS=Guill... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-005-B05-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679889 ID=EY679889; Name=EY679889; organism=Citrus sinensis; type=EST; length=941bp
GTTGCCGCATCTGATTGTGAGCGGTGACCAGAGGCACTGGGGTGAGTTTA
TCACTCCGGGGTTGTTGTTTTTGTACATAGCTGGATGGATCGGGTGGGTT
GGCAGGAGCTACTTGATCGCCATTAGCGGTGAAAAGAAGCCGGCCATGAA
GGAGATCATCATTGATGTTCCTTTGGCTTCCAGGTTGGTCTTCAGAGGTT
TTAGCTGGCCTGTTGCTGCTTACAGAGAGTTCGTTAATGGTGAACTTGTT
GTCAAGGACGTTTAATCATTCTATCTATTTCTATCTCCTCTGGAGTGGGA
CTCTACAGAGCAGGGGGCTGACAGAAAGGGAGGAAATATGAAAGCTGGAT
GCCTGGATTTCTGGGAATTGGTTGAGGAATGGGGAGAGGGAAATTTTATG
TGTCTAAAGTTTGTGAATTTGATTTTGTTGATTGATACTGATCCTGATCC
TGATCAAATCAAACTCAATTCTCGTTTGCTCTTCNNNANANAAAAAAAAA
AAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAANAAANNAGGGGGGGGGGCCCCCCCAAA
GGAATCAACCTTTACTTCCGCGGGGTGGCAACGTCAAAACCTCTTTTAAA
GTGGCCCCCAAAATTTATTTCCCGGGGCCGCCTTTTTCAAACCCCTGGGA
GGGGAAAAACCCTGGGGGTTCCCCCACTTTAATCCCCTTTGCACCACACC
CCCCCTTTCCCCCCGGGGGGTAAAAAAAAAAAAAAGGCCCCCCCCCATCC
CCCCCTTCCCCAACCTTTTCCCCCCCCCCCGGAGGGGGAAAGGGGGGAAC
CCCCCCCTGGAACGGGGCCCACTTTACCCCGCGGGGGGGGGGGTGGGGGG
GTTTTACCCCCGCGGGGTGGCCCCCCTTAAACCTTTTGCGC
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