EY679809

Overview
NameEY679809
Unique NameEY679809
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length968
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679809 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 1.511e-81
Identity = 125/154 (81.17%), Postives = 131/154 (85.06%), Query Frame = 3
Query:   12 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPK 473
            AGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR DNV  +D+VK+VD FPGQSIDFFGALRARVYDDEVR W            L+NS +  PTFEQPK
Sbjct:  238 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPK 391          

HSP 2 Score: 67.3958 bits (163), Expect = 1.511e-81
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 1
Query:  451 PQHSSNPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 573
            P     P+MT+EKLLEYGNM+VQEQENVKRVQLADKYL EA
Sbjct:  384 PPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEA 424          
BLAST of EY679809 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 4.374e-81
Identity = 125/154 (81.17%), Postives = 133/154 (86.36%), Query Frame = 3
Query:   12 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPK 473
            AGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++ ++K+VDTFPGQSIDFFGALRARVYDDEVR W            L+NS +  PTFEQPK
Sbjct:  238 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPK 391          

HSP 2 Score: 63.5438 bits (153), Expect = 4.374e-81
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 1
Query:  451 PQHSSNPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 573
            P     P+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EA
Sbjct:  384 PPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEA 424          
BLAST of EY679809 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 249.595 bits (636), Expect = 4.176e-80
Identity = 121/154 (78.57%), Postives = 128/154 (83.12%), Query Frame = 3
Query:   12 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPK 473
            AGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK++N RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIF+ D V  + +VKLVD FPGQSIDFFGALRARVY DEVR W            LVNSK+  P FEQP+
Sbjct:  232 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPE 385          

HSP 2 Score: 62.003 bits (149), Expect = 4.176e-80
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 1
Query:  451 PQHSSNPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 573
            P     P MT++KL+EYGNM+VQEQENVKRVQLAD+Y+S A
Sbjct:  378 PPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSA 418          

HSP 3 Score: 30.4166 bits (67), Expect = 4.176e-80
Identity = 18/50 (36.00%), Postives = 28/50 (56.00%), Query Frame = 2
Query:  575 ALGETNADAIPK*KFPWQSSPPNECTNSWKECPVPTAKTLNPIAKSDDGN 724
            ALG+ N DAI +  F  +++       + + C  P AK  +P A+SDDG+
Sbjct:  419 ALGDANKDAIDRGTFFGKAAQQVSLPVA-QGCTDPEAKNYDPTARSDDGS 467          
BLAST of EY679809 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 1.648e-74
Identity = 135/154 (87.66%), Postives = 136/154 (88.31%), Query Frame = 3
Query:   12 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPK 473
            AGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNVADDDIVKLVDTFPGQSIDFFGALRARVY DEVR W            LVNSKE  P+FEQPK
Sbjct:  234 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPK 387          

HSP 2 Score: 26.5646 bits (57), Expect = 1.648e-74
Identity = 18/51 (35.29%), Postives = 24/51 (47.06%), Query Frame = 2
Query:  575 ALGETNADAIPK*KFPWQSSPPNECTNSWKE-CPVPTAKTLNPIAKSDDGN 724
            ALG+ N DAI +  F    +          E C  P A   +P A+SDDG+
Sbjct:  421 ALGDANNDAIKRGTFYGGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGS 471          
BLAST of EY679809 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 267.7 bits (683), Expect = 4.768e-74
Identity = 128/154 (83.12%), Postives = 135/154 (87.66%), Query Frame = 3
Query:   12 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPK 473
            AGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR DNV D+DIVK+VD+FPGQSIDFFGALRARVYDDEVR W            LVNS+E  P FEQPK
Sbjct:  225 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPK 378          

HSP 2 Score: 32.7278 bits (73), Expect = 4.768e-74
Identity = 18/50 (36.00%), Postives = 26/50 (52.00%), Query Frame = 2
Query:  575 ALGETNADAIPK*KFPWQSSPPNECTNSWKECPVPTAKTLNPIAKSDDGN 724
            ALG+ N+DA+    F  Q +         + C  P AK  +P A+SDDG+
Sbjct:  412 ALGDANSDAMKTGSFYGQGAQQAGNLPVPEGCTDPVAKNFDPTARSDDGS 461          
BLAST of EY679809 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 4.953e-72
Identity = 133/154 (86.36%), Postives = 136/154 (88.31%), Query Frame = 3
Query:   12 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPK 473
            AGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR+DNVA +DIVKLVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTFEQPK
Sbjct:  234 AGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPK 387          

HSP 2 Score: 69.3218 bits (168), Expect = 3.734e-11
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 1
Query:  442 RKQPQHSSNPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 573
            ++ P     P+MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEA
Sbjct:  377 KEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEA 420          
BLAST of EY679809 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 6.469e-72
Identity = 132/154 (85.71%), Postives = 135/154 (87.66%), Query Frame = 3
Query:   12 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPK 473
            AGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++DIVK+VD FPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTFEQPK
Sbjct:  234 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPK 387          
BLAST of EY679809 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 266.159 bits (679), Expect = 2.081e-70
Identity = 129/154 (83.77%), Postives = 134/154 (87.01%), Query Frame = 3
Query:   12 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPK 473
            AGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V ++ +V+LVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTFEQPK
Sbjct:  230 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPTFEQPK 383          
BLAST of EY679809 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 2.081e-70
Identity = 129/154 (83.77%), Postives = 134/154 (87.01%), Query Frame = 3
Query:   12 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPK 473
            AGRMGGTTQYTVNNQMVNATLMNIAD PT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV D+ +V+LVDTFPGQSIDFFGALRARVYDDEVR W            LVNS+E  PTF+QPK
Sbjct:  221 AGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPK 374          
BLAST of EY679809 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 6.055e-70
Identity = 128/154 (83.12%), Postives = 134/154 (87.01%), Query Frame = 3
Query:   12 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPK 473
            AGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM+KFYWAPTREDRIG+C GIFR D V  +DIVKLVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE+ PTF+QPK
Sbjct:  231 AGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGVGVERIGRNLVNSKESPPTFDQPK 384          
The following BLAST results are available for this feature:
BLAST of EY679809 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA1_TOBAC1.511e-8181.17Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC4.374e-8181.17Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL4.176e-8078.57Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR1.648e-7487.66Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ4.768e-7483.12Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO4.953e-7286.36Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR6.469e-7285.71Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE2.081e-7083.77Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU2.081e-7083.77Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA6.055e-7083.12Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-004-C03-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679809 ID=EY679809; Name=EY679809; organism=Citrus sinensis; type=EST; length=968bp
CCACGCGTCCGGCTGGTCGTATGGGTGGCACCACCCAGTACACAGTTAAC
AACCAAATGGTTAACGCCACACTCATGAACATTGCTGATAACCCAACTTG
TGTCCAACTCCCTGGTATGTACAACAAGGAGGAGAACCCCCGTGTCCCAA
TCATAGTCACCGGTAATGACTTCTCAACATTGTATGCTCCTCTCATCCGT
GATGGTCGTATGGAGAAATTCTACTGGGCACCTACAAGGGAGGACCGTAT
TGGTGTGTGCAAGGGTATCTTCAGGAATGACAATGTGGCTGATGACGACA
TTGTCAAGCTTGTTGACACCTTCCCCGGCCAATCCATTGATTTCTTTGGA
GCCCTGAGGGCCAGAGTCTATGATGATGAGGTGAGGAATTGGATCTCTGG
TATTGGTGTTGGAAGCATTGGCAAGAGCCTTGTGAACTCAAAGGAAGCAG
CCCCAACATTCGAGCAACCCAAGGATGACAATGGAGAAGCTGCTCGAGTA
CGGAAACATGATTGTGCAAGAACAAGAGAATGTGAAGAGAGTTCAGTTGG
CTGACAAGTATTTGAGTGAAGCCCGCTCTTGGTGAAACTAATGCAGATGC
TATTCCAAAGTGAAAATTTCCATGGCAAAGCAGCCCACCAAATGAATGTA
CCAATTCCTGGAAGGAATGTCCTGTCCCAACTGCAAAAACTTTGAATCCC
ATTGCAAAAAGTGATGATGGAAACCGCCAAAACCCCCTTTAACCCTTTGT
TACCTTCGGTTTAAAAAAAGGCCCAACTTTGCTCAAGAAGGGCAAAATTC
CACAATAATTTGGCGGCTTTTTCCCTTCCTTTGATAAATAAAAAAAACCC
CTCCAATTTTTGATGTTTACACCAAACTACTTTATTAAATTTTTAAAAGA
AAAAAAAACAAGGGGCGCCCCCCTATAAGAAGTAACAAAGCCTCCCCTCG
CACGGCAGAGTGGCGACG
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