EY679808

Overview
NameEY679808
Unique NameEY679808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length974
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679808 vs. ExPASy Swiss-Prot
Match: RU17_ARATH (U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1 PE=1 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.558e-65
Identity = 120/171 (70.18%), Postives = 136/171 (79.53%), Query Frame = 1
Query:  136 MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRAPLEYKPPPEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKRDFESYGPIKRVGILS 648
            MGD  D F+RN NAAVQAR K QNRANVLQLKL+GQSHPTGLT NLLKLFEPR PLEYKPPPEKRKCPP TGMAQFVS+FAEPGDP YAPP  + E P ++R RIH                 YDP+NDPN +GDPYKTLFV+RL+YE++ESKIKR+FESYGPIKRV +++
Sbjct:    1 MGDSGDPFLRNPNAAVQARAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKPPPEKRKCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAEDLKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVT 171          
BLAST of EY679808 vs. ExPASy Swiss-Prot
Match: RU17_MOUSE (U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus GN=Snrnp70 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 5.072e-24
Identity = 60/131 (45.80%), Postives = 75/131 (57.25%), Query Frame = 1
Query:  259 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKRDFESYGPIKRV 636
            L  NLL LF PR P+ Y PP      EK    P  G+A ++  F +P D   APP  +AET  ER  R                   +DPHNDPN  GD +KTLFVAR++Y+TTESK++R+FE YGPIKR+
Sbjct:    5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRI 132          
BLAST of EY679808 vs. ExPASy Swiss-Prot
Match: RU17_HUMAN (U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens GN=SNRNP70 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 5.072e-24
Identity = 60/131 (45.80%), Postives = 75/131 (57.25%), Query Frame = 1
Query:  259 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKRDFESYGPIKRV 636
            L  NLL LF PR P+ Y PP      EK    P  G+A ++  F +P D   APP  +AET  ER  R                   +DPHNDPN  GD +KTLFVAR++Y+TTESK++R+FE YGPIKR+
Sbjct:    5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRI 132          
BLAST of EY679808 vs. ExPASy Swiss-Prot
Match: RU17_BOVIN (U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus GN=SNRNP70 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 5.072e-24
Identity = 60/131 (45.80%), Postives = 75/131 (57.25%), Query Frame = 1
Query:  259 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKRDFESYGPIKRV 636
            L  NLL LF PR P+ Y PP      EK    P  G+A ++  F +P D   APP  +AET  ER  R                   +DPHNDPN  GD +KTLFVAR++Y+TTESK++R+FE YGPIKR+
Sbjct:    5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRI 132          
BLAST of EY679808 vs. ExPASy Swiss-Prot
Match: RU17_XENLA (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis GN=snrnp70 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.517e-23
Identity = 60/134 (44.78%), Postives = 76/134 (56.72%), Query Frame = 1
Query:  259 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKRDFESYGPIKRVGIL 645
            L  NLL LF PR P+ Y PP      EK    P  G+A ++  F +P D   APP  +AET  ER  R                   +DPHND N  GD +KTLFVAR++Y+TTESK++R+FE YGPIKR+ I+
Sbjct:    5 LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHIV 135          
BLAST of EY679808 vs. ExPASy Swiss-Prot
Match: RU17_XENTR (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis GN=snrnp70 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.607e-23
Identity = 59/131 (45.04%), Postives = 74/131 (56.49%), Query Frame = 1
Query:  259 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKRDFESYGPIKRV 636
            L  NLL LF PR P+ Y PP      EK    P  G+A ++  F +P D   APP  +AET  ER  R                   +DPHND N  GD +KTLFVAR++Y+TTESK++R+FE YGPIKR+
Sbjct:    5 LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRI 132          
BLAST of EY679808 vs. ExPASy Swiss-Prot
Match: RU17_SCHPO (U1 small nuclear ribonucleoprotein 70 kDa homolog OS=Schizosaccharomyces pombe GN=usp101 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.688e-19
Identity = 54/133 (40.60%), Postives = 78/133 (58.65%), Query Frame = 1
Query:  259 LTANLLKLFEPRAPLEYKPP----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKRDFESYGPIKRVGIL 645
            L A LL LF PR PL Y PP    PEKR  P ++G+A+++  +A+  D  Y P     E+  E+R R+                  +DP +D +V GDPYKT+F++RLSY+T ES I+R+F  YGPI+R+ ++
Sbjct:    5 LPAPLLALFAPRPPLRYLPPMDVPPEKRSTPRVSGIAKYLK-YAQSHDQQYHP----TESLEEKRLRLRDEKQKQQRERLRSMIKVWDPDHDRHVIGDPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVV 132          
BLAST of EY679808 vs. ExPASy Swiss-Prot
Match: RU17_DROME (U1 small nuclear ribonucleoprotein 70 kDa OS=Drosophila melanogaster GN=snRNP70K PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.338e-16
Identity = 47/133 (35.34%), Postives = 74/133 (55.64%), Query Frame = 1
Query:  259 LTANLLKLFEPRAPLEYKPP----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKRDFESYGPIKRVGIL 645
            L  NLL LF  R P+ + PP    P ++K     G+A+F++ F +P D      VE  +  +ERR R                   +DP    N + DP++TLF+AR++Y+T+ESK++R+FE YGPIK++ ++
Sbjct:    5 LPPNLLALFAAREPIPFMPPVDKLPHEKKSRGYLGVAKFMADFEDPKDTPLPKTVETRQERLERRRR---EKAEQVAYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLI 134          
BLAST of EY679808 vs. ExPASy Swiss-Prot
Match: RU17_DICDI (U1 small nuclear ribonucleoprotein 70 kDa OS=Dictyostelium discoideum GN=snrnp70 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.132e-15
Identity = 43/126 (34.13%), Postives = 67/126 (53.17%), Query Frame = 1
Query:  259 LTANLLKLFEPRAPLEYKPPPEKRKCPPLTGMAQFVSHFAEPG--DPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKRDFESYGPIK 630
            L  NL  +F PR P  + PPP     PP TG+  ++S F +P   +P     +E  E   E+R +                   +DP+++   +GDPYKT+FV+R+SY+TT+ K++ +F  +GPIK
Sbjct:    4 LPPNLKIMFNPRHPPPFLPPPPPSNLPPYTGLRDYLSIFTDPSNEEPFKKEHIENLE---EKREKKRKLKISENDERISKSLKAWDPYSNSETTGDPYKTIFVSRISYKTTQQKLEFEFGQFGPIK 126          
The following BLAST results are available for this feature:
BLAST of EY679808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
RU17_ARATH1.558e-6570.18U1 small nuclear ribonucleoprotein 70 kDa OS=Arabi... [more]
RU17_MOUSE5.072e-2445.80U1 small nuclear ribonucleoprotein 70 kDa OS=Mus m... [more]
RU17_HUMAN5.072e-2445.80U1 small nuclear ribonucleoprotein 70 kDa OS=Homo ... [more]
RU17_BOVIN5.072e-2445.80U1 small nuclear ribonucleoprotein 70 kDa OS=Bos t... [more]
RU17_XENLA2.517e-2344.78U1 small nuclear ribonucleoprotein 70 kDa OS=Xenop... [more]
RU17_XENTR5.607e-2345.04U1 small nuclear ribonucleoprotein 70 kDa OS=Xenop... [more]
RU17_SCHPO1.688e-1940.60U1 small nuclear ribonucleoprotein 70 kDa homolog ... [more]
RU17_DROME1.338e-1635.34U1 small nuclear ribonucleoprotein 70 kDa OS=Droso... [more]
RU17_DICDI1.132e-1534.13U1 small nuclear ribonucleoprotein 70 kDa OS=Dicty... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-004-C02-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679808 ID=EY679808; Name=EY679808; organism=Citrus sinensis; type=EST; length=974bp
CCACGCGTCCGTACCAAAACCCGATCCAAATTCAACAAATACCCAGCTTG
ATGCTATTATCTTCTTAAGAACCCTGGTCACCAAACCCTAGCTTGTAACC
AGAACCCTAGTTGGCACCCGATCTCCTCTGTAAACATGGGAGACTACAAC
GATGCATTCATGCGTAACCAAAACGCCGCCGTTCAGGCCCGTACTAAGGC
CCAGAACCGCGCCAACGTCCTTCAGCTTAAGCTGATTGGGCAAAGCCATC
CTACCGGTTTAACAGCCAATCTCTTGAAGCTCTTTGAGCCTCGAGCTCCG
CTTGAGTATAAACCACCTCCAGAGAAAAGAAAATGCCCGCCACTGACAGG
AATGGCGCAGTTTGTTAGTCACTTTGCTGAACCTGGAGATCCTCTGTATG
CTCCACCTGTAGAGAAGGCTGAGACTCCTGTAGAAAGAAGGGCTAGAATC
CACAAGTTACGACTAGAGAAGGGTGCAGAAAAGGCTGCTGAAGAACTTAA
GAAATATGATCCTCATAATGACCCAAATGTGTCAGGAGATCCATACAAGA
CACTGTTTGTTGCTAGGCTGAGTTATGAGACAACTGAGAGTAAAATCAAA
AGGGATTTTGAGTCTTATGGGCCAATTAAACGGGTAGGTATTTTGAGCAC
CCCCAAGTGGGTTTTGGGAAGAAGGGTGGTGGGCCCACTTTTACCCTTTT
GATATCTTTCCAAAAAGAATTTTAGCCTTAAAAATTAAGTTTTTCCAAAC
TATGTAAAAAAAGGCCTTTATTTTTTAATTTTTCTGTGGTTTAAAAAAAA
AAACTTTATTTTTCTTAAAAACAAAAAAGTTTTAACCTGGTTAAATTTTT
GTTGGGGGTTCCGCCCCCTTGTTTGGTTTTGGGGGGGGGATCCCCAAAAA
ATGGGGCATAAAAAAAAAAAAAAAAAAAAACGCGCTTTTTTGAAAATAAT
TTTTTTAGCCACCCCCCCCCCCCC
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