EY679808
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY679808 vs. ExPASy Swiss-Prot
Match: RU17_ARATH (U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1 PE=1 SV=1) HSP 1 Score: 249.98 bits (637), Expect = 1.558e-65 Identity = 120/171 (70.18%), Postives = 136/171 (79.53%), Query Frame = 1 Query: 136 MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRAPLEYKPPPEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKRDFESYGPIKRVGILS 648 MGD D F+RN NAAVQAR K QNRANVLQLKL+GQSHPTGLT NLLKLFEPR PLEYKPPPEKRKCPP TGMAQFVS+FAEPGDP YAPP + E P ++R RIH YDP+NDPN +GDPYKTLFV+RL+YE++ESKIKR+FESYGPIKRV +++ Sbjct: 1 MGDSGDPFLRNPNAAVQARAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKPPPEKRKCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAEDLKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVT 171
BLAST of EY679808 vs. ExPASy Swiss-Prot
Match: RU17_MOUSE (U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus GN=Snrnp70 PE=1 SV=2) HSP 1 Score: 112.079 bits (279), Expect = 5.072e-24 Identity = 60/131 (45.80%), Postives = 75/131 (57.25%), Query Frame = 1 Query: 259 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKRDFESYGPIKRV 636 L NLL LF PR P+ Y PP EK P G+A ++ F +P D APP +AET ER R +DPHNDPN GD +KTLFVAR++Y+TTESK++R+FE YGPIKR+ Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRI 132
BLAST of EY679808 vs. ExPASy Swiss-Prot
Match: RU17_HUMAN (U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens GN=SNRNP70 PE=1 SV=2) HSP 1 Score: 112.079 bits (279), Expect = 5.072e-24 Identity = 60/131 (45.80%), Postives = 75/131 (57.25%), Query Frame = 1 Query: 259 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKRDFESYGPIKRV 636 L NLL LF PR P+ Y PP EK P G+A ++ F +P D APP +AET ER R +DPHNDPN GD +KTLFVAR++Y+TTESK++R+FE YGPIKR+ Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRI 132
BLAST of EY679808 vs. ExPASy Swiss-Prot
Match: RU17_BOVIN (U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus GN=SNRNP70 PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 5.072e-24 Identity = 60/131 (45.80%), Postives = 75/131 (57.25%), Query Frame = 1 Query: 259 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKRDFESYGPIKRV 636 L NLL LF PR P+ Y PP EK P G+A ++ F +P D APP +AET ER R +DPHNDPN GD +KTLFVAR++Y+TTESK++R+FE YGPIKR+ Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRI 132
BLAST of EY679808 vs. ExPASy Swiss-Prot
Match: RU17_XENLA (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis GN=snrnp70 PE=2 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 2.517e-23 Identity = 60/134 (44.78%), Postives = 76/134 (56.72%), Query Frame = 1 Query: 259 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKRDFESYGPIKRVGIL 645 L NLL LF PR P+ Y PP EK P G+A ++ F +P D APP +AET ER R +DPHND N GD +KTLFVAR++Y+TTESK++R+FE YGPIKR+ I+ Sbjct: 5 LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHIV 135
BLAST of EY679808 vs. ExPASy Swiss-Prot
Match: RU17_XENTR (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis GN=snrnp70 PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 5.607e-23 Identity = 59/131 (45.04%), Postives = 74/131 (56.49%), Query Frame = 1 Query: 259 LTANLLKLFEPRAPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKRDFESYGPIKRV 636 L NLL LF PR P+ Y PP EK P G+A ++ F +P D APP +AET ER R +DPHND N GD +KTLFVAR++Y+TTESK++R+FE YGPIKR+ Sbjct: 5 LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAETREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRI 132
BLAST of EY679808 vs. ExPASy Swiss-Prot
Match: RU17_SCHPO (U1 small nuclear ribonucleoprotein 70 kDa homolog OS=Schizosaccharomyces pombe GN=usp101 PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.688e-19 Identity = 54/133 (40.60%), Postives = 78/133 (58.65%), Query Frame = 1 Query: 259 LTANLLKLFEPRAPLEYKPP----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKRDFESYGPIKRVGIL 645 L A LL LF PR PL Y PP PEKR P ++G+A+++ +A+ D Y P E+ E+R R+ +DP +D +V GDPYKT+F++RLSY+T ES I+R+F YGPI+R+ ++ Sbjct: 5 LPAPLLALFAPRPPLRYLPPMDVPPEKRSTPRVSGIAKYLK-YAQSHDQQYHP----TESLEEKRLRLRDEKQKQQRERLRSMIKVWDPDHDRHVIGDPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVV 132
BLAST of EY679808 vs. ExPASy Swiss-Prot
Match: RU17_DROME (U1 small nuclear ribonucleoprotein 70 kDa OS=Drosophila melanogaster GN=snRNP70K PE=1 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 1.338e-16 Identity = 47/133 (35.34%), Postives = 74/133 (55.64%), Query Frame = 1 Query: 259 LTANLLKLFEPRAPLEYKPP----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKRDFESYGPIKRVGIL 645 L NLL LF R P+ + PP P ++K G+A+F++ F +P D VE + +ERR R +DP N + DP++TLF+AR++Y+T+ESK++R+FE YGPIK++ ++ Sbjct: 5 LPPNLLALFAAREPIPFMPPVDKLPHEKKSRGYLGVAKFMADFEDPKDTPLPKTVETRQERLERRRR---EKAEQVAYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLI 134
BLAST of EY679808 vs. ExPASy Swiss-Prot
Match: RU17_DICDI (U1 small nuclear ribonucleoprotein 70 kDa OS=Dictyostelium discoideum GN=snrnp70 PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 1.132e-15 Identity = 43/126 (34.13%), Postives = 67/126 (53.17%), Query Frame = 1 Query: 259 LTANLLKLFEPRAPLEYKPPPEKRKCPPLTGMAQFVSHFAEPG--DPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKRDFESYGPIK 630 L NL +F PR P + PPP PP TG+ ++S F +P +P +E E E+R + +DP+++ +GDPYKT+FV+R+SY+TT+ K++ +F +GPIK Sbjct: 4 LPPNLKIMFNPRHPPPFLPPPPPSNLPPYTGLRDYLSIFTDPSNEEPFKKEHIENLE---EKREKKRKLKISENDERISKSLKAWDPYSNSETTGDPYKTIFVSRISYKTTQQKLEFEFGQFGPIK 126 The following BLAST results are available for this feature:
BLAST of EY679808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EY679808 ID=EY679808; Name=EY679808; organism=Citrus sinensis; type=EST; length=974bpback to top |