EY662325

Overview
NameEY662325
Unique NameEY662325
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY662325_ssr139 microsatellite EY662325_ssr139:139..154. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4913 contig Csv1_Contig4913:66..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY662325 vs. ExPASy Swiss-Prot
Match: PGR5_ARATH (Protein PROTON GRADIENT REGULATION 5, chloroplastic OS=Arabidopsis thaliana GN=PGR5 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.725e-41
Identity = 91/135 (67.41%), Postives = 109/135 (80.74%), Query Frame = 2 
Query:  182 MAATSVCAAG-----LSSSFHGSWGASFANGGEEYR-MLARSVPNVRVAR----PIRMQPMMGNINEGKGIFAPVVVLTRNIIGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGERLGFLA 556
            MAA S+ A G     + +SF+G WG+S +  GE+Y+ ML+++V   + AR     IR  PMM N+NEGKG+FAP+VV+TRN++GKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGERLGFLA
Sbjct:    1 MAAASISAIGCNQTLIGTSFYGGWGSSIS--GEDYQTMLSKTVAPPQQARVSRKAIRAVPMMKNVNEGKGLFAPLVVVTRNLVGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGERLGFLA 133
The following BLAST results are available for this feature:
BLAST of EY662325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PGR5_ARATH4.725e-4167.41Protein PROTON GRADIENT REGULATION 5, chloroplasti... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-042-H09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY662325 ID=EY662325; Name=EY662325; organism=Citrus sinensis; type=EST; length=717bp
CCCTGGTACATCTGTTATACCGGTCCGGAATTCTTTCGTCAACCACGCGT
CCGTCTCATTNCTGACANAAACAACCCCAGAAACCACAAACAAGCTAGCA
AACCCTCTGAGCCTCCTTCTCTCCAAGCACAAGCTATTTGTGTGTGTGTG
TGTGCGCGCGTGCGTGTTGAGCGTTTCAATTATGGCTGCTACATCAGTAT
GTGCAGCTGGGTTATCATCTTCGTTTCATGGAAGCTGGGGAGCTTCGTTT
GCTAATGGTGGTGAAGAATACAGGATGTTGGCAAGATCAGTGCCGAATGT
TAGAGTGGCAAGACCCATTAGAATGCAACCGATGATGGGGAACATTAATG
AAGGCAAAGGCATTTTTGCTCCTGTTGTTGTTCTCACTCGTAATATCATT
GGCAAGAAGAGGTTCAATCAGCTTAGAGGCAAAGCTATTGCCTTGCATTC
TCAGGTAATTACTGAATTCTGCAAATCAATAGGAGCTGATGCAAAGCAAA
GGCAAGGCCTCATCCGTTTGGCTAAGAAGAATGGAGAAAGACTTGGCTTC
CTTGCATGATAAGAAAAACATTTATTGTTTTGTGTTGTTATCACCATGAG
ATGTTTTAAGTTTATAGTTTTTTCAAGTGCTTTCTAATGTAAACGTACTT
TTCTTCAGCTGGGTGCGTCCCAGAAATAGAATGTAACCTAAGATTAATCC
AAAAAAAAAAAAAAAAA
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